View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18293_high_7 (Length: 309)
Name: NF18293_high_7
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 42307693 - 42307416
Alignment:
| Q |
14 |
gaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaagtaatttaattcctttttgcatcatatgcttaattttac |
113 |
Q |
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| T |
42307693 |
gaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaagtaatttaattcctttttgcatcatatgcataattttac |
42307594 |
T |
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| Q |
114 |
aatgttaaacatatatatgaattgtgtataggttttatactagagtatatcatggttaaatattagtcagttaagcagtcatctattgtgattgtgatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307593 |
aatgttaaacatatatatgaattgtgtataggttttatactagagtatatcatggttaaatattagtcagttaagcagtcatctattgtgattgtgatat |
42307494 |
T |
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| Q |
214 |
gattcaatactgcatttgtgtttataactggtgcaaatttacatgcttcatatcttgtttaccaacttgtgacagaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307493 |
gattcaatactgcatttgtgtttataactggtgcaaatttacatgcttcatatcttgtttaccaacttgtgacagaat |
42307416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 51570635 - 51570711
Alignment:
| Q |
14 |
gaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaagtaatttaattcctttttg |
93 |
Q |
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||||||||||||||||| |||||||||||| || ||||||||||||| || ||| |||| |||||||||| ||||||| |
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| T |
51570635 |
gaactaaaaaaggtaagcttttctaatttc--tg-tgatgacattagaattattggaaaagttaatttaattgctttttg |
51570711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 51570874 - 51570914
Alignment:
| Q |
251 |
tttacatgcttcatatcttgtttaccaacttgtgacagaat |
291 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| |
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| T |
51570874 |
tttatatgcttcatatcttgtttaccaactcgtgacagaat |
51570914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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