View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18293_low_1 (Length: 719)
Name: NF18293_low_1
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 41 - 702
Target Start/End: Original strand, 28438593 - 28439254
Alignment:
| Q |
41 |
atgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttattattttccaactccattccatgcgagtaaagcaatatatata |
140 |
Q |
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| T |
28438593 |
atgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttattattttccaactccattccatgcgagtaaagcaatatatata |
28438692 |
T |
|
| Q |
141 |
ttgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaatgaaggttatctaaaagcagtgaaacccgacaatatttcag |
240 |
Q |
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| T |
28438693 |
ttgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaatgaaggttatctaaaagcagtgaaacccgacaatatttcag |
28438792 |
T |
|
| Q |
241 |
atagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagtgtttatacgtatattgagagaaacccgataaatagtttaa |
340 |
Q |
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| T |
28438793 |
atagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagtgtttatacgtatattgagagaaacccgataaatagtttaa |
28438892 |
T |
|
| Q |
341 |
attgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcnnnnnnnnnnnnnnnntaagtggctcaagtgttataacatccacca |
440 |
Q |
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| T |
28438893 |
attgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcaaaacaaaacaaaaaataagtggctcaagtgttataacatccacca |
28438992 |
T |
|
| Q |
441 |
aaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattagaccgttcttatctttgattgtgtgtcttttcctaaaaaccg |
540 |
Q |
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| T |
28438993 |
aaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattagaccgttcttatctttgattgtgtgtcttttcctaaaaaccg |
28439092 |
T |
|
| Q |
541 |
gagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcaggaatgataatactccaatctaattgtctacataacagaacat |
640 |
Q |
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| T |
28439093 |
gagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcaggaatgataatactccaatctaattgtctacataacagaacat |
28439192 |
T |
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| Q |
641 |
gaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatatt |
702 |
Q |
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| T |
28439193 |
gaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatatt |
28439254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 35616400 - 35616367
Alignment:
| Q |
42 |
tgagatcctcacaggtttcaagcttaatcttcta |
75 |
Q |
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| T |
35616400 |
tgagatcctcacaggcttcaagcttaatcttcta |
35616367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 697039 - 696996
Alignment:
| Q |
136 |
atatattgttgcttgtttaccaagcaaaggagtggattccctaa |
179 |
Q |
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| T |
697039 |
atatattgttgcttatttaccaagcaaatgagtggattccctaa |
696996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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