View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18293_low_2 (Length: 577)
Name: NF18293_low_2
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 170 - 497
Target Start/End: Original strand, 9870827 - 9871149
Alignment:
| Q |
170 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
269 |
Q |
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| T |
9870827 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
9870926 |
T |
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| Q |
270 |
atattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaa |
369 |
Q |
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| T |
9870927 |
atattcttttagacatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaa |
9871026 |
T |
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| Q |
370 |
ggtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaataattttcctttagaaaaaagag |
469 |
Q |
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| T |
9871027 |
ggtcaaatttatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggtatagaaaaaaaaa-----aattaaagaaaagag |
9871121 |
T |
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| Q |
470 |
ttcaagtctaagaagctttgacaagtga |
497 |
Q |
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| T |
9871122 |
ttcaagtctaagaagctttgacaagtga |
9871149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 172 - 446
Target Start/End: Original strand, 9876367 - 9876642
Alignment:
| Q |
172 |
tatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctacta |
270 |
Q |
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| T |
9876367 |
tatgttcctaatgccagtacttacctatgacactatatcatcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctacta |
9876466 |
T |
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| Q |
271 |
tattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaag |
370 |
Q |
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| T |
9876467 |
taatcttttagacatgtccatttcaatatggacctacatggattttatctacttatataatgttttaaaaaacattatttggataaagaatacttccaag |
9876566 |
T |
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| Q |
371 |
gtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaa |
446 |
Q |
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| T |
9876567 |
gtcaaatatatacgtcaccttctatagtttaaagggaaacgttgatatatcacaagagttatcgacataccaaaaa |
9876642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 9870670 - 9870770
Alignment:
| Q |
14 |
atattaacatttattgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
113 |
Q |
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| T |
9870670 |
atattaacatttaccgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
9870769 |
T |
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| Q |
114 |
c |
114 |
Q |
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| T |
9870770 |
c |
9870770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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