View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18293_low_4 (Length: 491)
Name: NF18293_low_4
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 51030592 - 51030823
Alignment:
| Q |
14 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030592 |
cacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
51030691 |
T |
|
| Q |
114 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagcaaatga |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030692 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagcaaatga |
51030791 |
T |
|
| Q |
214 |
agtacacaatcatttca-tttttagattaata |
244 |
Q |
| |
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||| ||||||||||||| |||||||||||||| |
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| T |
51030792 |
agtgcacaatcatttcattttttagattaata |
51030823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 51063344 - 51063575
Alignment:
| Q |
14 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
113 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063344 |
cacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
51063443 |
T |
|
| Q |
114 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagcaaatga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063444 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagcaaatga |
51063543 |
T |
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| Q |
214 |
agtacacaatcatttca-tttttagattaata |
244 |
Q |
| |
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||| ||||||||||||| |||||||||||||| |
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| T |
51063544 |
agtgcacaatcatttcattttttagattaata |
51063575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 253 - 475
Target Start/End: Original strand, 51030951 - 51031169
Alignment:
| Q |
253 |
gatttttaaaacatttgttgaaacaaactatttaatttgtatatggaaaagaaagggtattaattattcaccttggttaataggagtccatgtgaaaaac |
352 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51030951 |
gatttttaaaacatttgttgaaacaaaatatttaatttgtatatggaaaagaaagggtatta----ttcaccttggttaataggagtccatgtgaaaaac |
51031046 |
T |
|
| Q |
353 |
caataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaagttgtgagtggtcttcaact |
452 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51031047 |
caataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaggttgtgagtggtcttcaact |
51031146 |
T |
|
| Q |
453 |
ctgcataacctctggttgcatat |
475 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
51031147 |
ctgcataacctctggttgcatat |
51031169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 253 - 475
Target Start/End: Original strand, 51063703 - 51063921
Alignment:
| Q |
253 |
gatttttaaaacatttgttgaaacaaactatttaatttgtatatggaaaagaaagggtattaattattcaccttggttaataggagtccatgtgaaaaac |
352 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
51063703 |
gatttttaaaacatttgttgaaacaaaatatttaatttgtatatggaaaagaaagggtatta----ttcaccttggttaataggagtccatgtgaaaaac |
51063798 |
T |
|
| Q |
353 |
caataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaagttgtgagtggtcttcaact |
452 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51063799 |
caataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaggttgtgagtggtcttcaact |
51063898 |
T |
|
| Q |
453 |
ctgcataacctctggttgcatat |
475 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
51063899 |
ctgcataacctctggttgcatat |
51063921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 51068913 - 51069080
Alignment:
| Q |
14 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
113 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || |||||||| ||||| |||||||| |
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| T |
51068913 |
cacaaacatttcctttactaatatttcccattataagctcccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttttctat |
51069012 |
T |
|
| Q |
114 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggt |
181 |
Q |
| |
|
|| | | |||||| ||||||||| ||||||| |||||||||||||||||| || || |||||||||| |
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| T |
51069013 |
gatagatataacattacttggcatattctctagcttgtttaacacatattgcttcagtttagcagggt |
51069080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 40618068 - 40617876
Alignment:
| Q |
14 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
113 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| || |||||||| |||| ||||| ||||||||||||||| || || ||||||| || ||||||||||| |
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|
| T |
40618068 |
cacaaacatttcctttgctaatatttcccattatgagctcccatggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctat |
40617969 |
T |
|
| Q |
114 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaag |
206 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||||| ||||| ||||||| ||| || ||||| ||||||||| ||||||||| |||||||| |
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|
| T |
40617968 |
gaaagatctaacatcacttggcattttctctaacttctttaatacatattctttcagtttagccgggtcttgtagtagctctttttctgtaag |
40617876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 51034870 - 51035061
Alignment:
| Q |
14 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
113 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| || || |||||||||||||||| ||||||||||||||| || || |||||||| | ||||||||||| |
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|
| T |
51034870 |
cacaaacattgtttttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttctat |
51034969 |
T |
|
| Q |
114 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa |
205 |
Q |
| |
|
|| | | |||||| |||||| |||| ||||| |||| ||||||||||||||||||| |||||||| || | |||||||||||||||||||| |
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|
| T |
51034970 |
gataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgctagctctttatctgtaa |
51035061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 40616990 - 40616879
Alignment:
| Q |
318 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
417 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||| ||||||| ||||||| |||||| | ||| ||||| ||||||||||| |||||||| ||||| |
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| T |
40616990 |
attcaccttggcttgtaggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcat |
40616891 |
T |
|
| Q |
418 |
gaacattggttc |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40616890 |
gaacattggttc |
40616879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 51035253 - 51035397
Alignment:
| Q |
318 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
417 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
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|
| T |
51035253 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
51035352 |
T |
|
| Q |
418 |
gaacattggttcaaagttgtgagtggtcttcaactctgcataacc |
462 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||||||| |
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|
| T |
51035353 |
gaacattggttcaagttcgtgagtgtccttcaactctacataacc |
51035397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 51069240 - 51069323
Alignment:
| Q |
334 |
aggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
417 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| ||| || | | | ||||| ||||||||||||||| || ||||||| |
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| T |
51069240 |
aggagtccaagtgaaaaaccagtaaacacctttctcatgacaaggaacaactccagctctaaaacctttgccatagaactgcat |
51069323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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