View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18293_low_5 (Length: 375)
Name: NF18293_low_5
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 2136253 - 2136605
Alignment:
| Q |
16 |
atccatacacactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagnnnnnnnnnnnnnnngtg |
115 |
Q |
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| T |
2136253 |
atccatacacactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagttttttcacttttttgtg |
2136352 |
T |
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| Q |
116 |
ttatgtgtgtgaatgatgataaagtgggaatttaaagagttaggaaggagtttaatggtgaagtgaaaaaagggtcaaagaaagagttcagagattggtt |
215 |
Q |
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| T |
2136353 |
ttatgtgtgtgaatgatgataaagtgggaatttaaagagttaggaaggagtttaatg-tgaagtgaaaaaagggtcaaagaaagagttcagagattggtt |
2136451 |
T |
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| Q |
216 |
aaaaggttgaacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtga |
315 |
Q |
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| T |
2136452 |
aaaaggttgaacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtga |
2136551 |
T |
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| Q |
316 |
gaagaaatggtgagcatttatagagatgtgttattgtgtatttatgatgatgtc |
369 |
Q |
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| T |
2136552 |
gaagaaatggtgaacatttatagagatgtgttattgtgtatttatgatgatgtc |
2136605 |
T |
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