View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18294_high_6 (Length: 324)

Name: NF18294_high_6
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18294_high_6
NF18294_high_6
[»] chr3 (43 HSPs)
chr3 (4-316)||(2491905-2492217)
chr3 (1-272)||(2476457-2476725)
chr3 (9-272)||(7324391-7324648)
chr3 (46-256)||(2631222-2631432)
chr3 (137-263)||(7442946-7443072)
chr3 (45-256)||(9594600-9594811)
chr3 (52-266)||(2659118-2659332)
chr3 (1-266)||(9561951-9562210)
chr3 (137-256)||(2644338-2644457)
chr3 (58-266)||(2635595-2635806)
chr3 (127-261)||(9565800-9565934)
chr3 (1-89)||(2474926-2475014)
chr3 (46-266)||(7334205-7334425)
chr3 (46-232)||(768329-768515)
chr3 (193-263)||(746352-746422)
chr3 (182-256)||(754585-754659)
chr3 (182-263)||(7942486-7942567)
chr3 (182-243)||(43991961-43992022)
chr3 (182-256)||(1891040-1891114)
chr3 (45-100)||(7443121-7443176)
chr3 (46-96)||(754745-754795)
chr3 (182-232)||(2442040-2442090)
chr3 (50-233)||(2502017-2502200)
chr3 (182-230)||(13498225-13498273)
chr3 (182-249)||(783782-783849)
chr3 (182-232)||(2696732-2696782)
chr3 (182-232)||(3754601-3754651)
chr3 (182-232)||(4142134-4142184)
chr3 (182-232)||(4157944-4157994)
chr3 (182-232)||(12133098-12133148)
chr3 (183-232)||(2459277-2459326)
chr3 (182-233)||(771498-771549)
chr3 (182-233)||(2456250-2456301)
chr3 (185-232)||(3746012-3746059)
chr3 (182-233)||(7430535-7430586)
chr3 (1-36)||(43991768-43991803)
chr3 (182-240)||(9608336-9608394)
chr3 (182-232)||(37753345-37753395)
chr3 (183-232)||(7398179-7398228)
chr3 (184-233)||(9587184-9587233)
chr3 (45-81)||(7427756-7427792)
chr3 (45-81)||(12217891-12217927)
chr3 (187-243)||(37757725-37757781)
[»] chr2 (9 HSPs)
chr2 (137-263)||(33020269-33020395)
chr2 (137-263)||(33038116-33038242)
chr2 (190-249)||(34560900-34560959)
chr2 (191-249)||(6538844-6538902)
chr2 (182-232)||(36577367-36577417)
chr2 (176-232)||(11237688-11237744)
chr2 (182-249)||(7156175-7156242)
chr2 (182-232)||(7160754-7160804)
chr2 (182-263)||(33026658-33026739)
[»] scaffold0044 (1 HSPs)
scaffold0044 (185-263)||(89147-89225)
[»] chr5 (11 HSPs)
chr5 (182-249)||(11081814-11081881)
chr5 (182-232)||(23766862-23766912)
chr5 (182-232)||(23816710-23816760)
chr5 (182-230)||(20292996-20293044)
chr5 (182-233)||(2067051-2067102)
chr5 (182-232)||(23769646-23769696)
chr5 (182-232)||(23819494-23819544)
chr5 (182-231)||(3181718-3181767)
chr5 (182-230)||(20301444-20301492)
chr5 (182-230)||(20305857-20305905)
chr5 (182-230)||(20310261-20310309)
[»] chr7 (3 HSPs)
chr7 (182-232)||(1078160-1078210)
chr7 (182-262)||(39298978-39299058)
chr7 (1-33)||(39298800-39298832)
[»] chr6 (6 HSPs)
chr6 (176-259)||(24417459-24417542)
chr6 (182-243)||(4182990-4183051)
chr6 (182-243)||(4743834-4743895)
chr6 (183-254)||(19119065-19119136)
chr6 (183-254)||(19126359-19126430)
chr6 (185-230)||(9819831-9819876)
[»] chr4 (2 HSPs)
chr4 (185-256)||(20016161-20016232)
chr4 (182-256)||(20019748-20019822)
[»] chr1 (5 HSPs)
chr1 (185-263)||(51381424-51381502)
chr1 (182-243)||(51756739-51756800)
chr1 (182-243)||(51858607-51858668)
chr1 (185-243)||(51762921-51762979)
chr1 (187-248)||(51407543-51407604)
[»] scaffold1004 (1 HSPs)
scaffold1004 (176-234)||(2138-2196)
[»] scaffold0760 (1 HSPs)
scaffold0760 (176-234)||(4633-4691)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 2491905 - 2492217
Alignment:
Q  4 gttagtggcactgttaattggttggcattttatcattcacatattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttg 103  Q
    ||||||||||||||||||||||| |||| | || |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2491905 gttagtggcactgttaattggttagcatgtgatgattcatgtattctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttg 2492004  T
Q  104 ataatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagta 203  Q
    | ||||||| | || || ||| |||  ||||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  2492005 agaatgagaatgattcgttgatcttaagtgtgctgagggattgcttgtgtgtttttgcaactattgataggattttgaatgtttggattatgaaggagta 2492104  T
Q  204 tggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtttagacgcctatgaagatctccaaccctatactgtttcatat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2492105 tggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtttagacgcctatgaagatctcgaaccctatactgtttcatat 2492204  T
Q  304 atttctgatgatg 316  Q
    |||||||| ||||    
T  2492205 atttctgaggatg 2492217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 2476457 - 2476725
Alignment:
Q  1 tttgttagtggcactgttaattggttggcattttatcattcacatattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgatt 100  Q
    ||||| ||||||||| |||||||||||||  || || ||||| | ||||||||||| |||||| ||||||||||||||||||  ||||| ||||||||||    
T  2476457 tttgtgagtggcactcttaattggttggcccttgatgattcaaaaattctttctcttgatttaaagaaggagtcatatcaactgcttttgctacctgatt 2476556  T
Q  101 ttgataatgagagtcatacgatgacctt---gggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaa 197  Q
          |  || ||||| ||  || |||   || ||| |||||||||||||||||| | | |||||||| ||||| | || |  ||||||||||||||||    
T  2476557 ------acaagtgtcattcgtggatcttcttggatgtagtgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaa 2476650  T
Q  198 ggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtttagacgccta 272  Q
      | |||||||||  ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  2476651 acactatggaaataaagagtcttggactaaattgtacactgttcctaacatgcaagatcggggtttagaagccta 2476725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 7324648 - 7324391
Alignment:
Q  9 tggcactgttaattggttggcattttatcattcacatattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataat 108  Q
    ||||||||||||||||||||||  | || ||||| |||||||||| || |||||| | ||||||||||||||||| ||||| ||||||||||  || |||    
T  7324648 tggcactgttaattggttggcaagtgatgattcaaatattctttcgcttgatttaaacaaggagtcatatcaacatcttttgctacctgattccgaaaat 7324549  T
Q  109 gagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaa 208  Q
    ||    | || |  || ||||  ||| |||||||||||| |  || | |||| | ||  ||||| |  |||  ||||||||||||||||||| || ||||    
T  7324548 ga----cttatg--gatcttgcatgtggtgagggattgccttggtctctttggaactggtgatatgtctttggatgtttggattatgaaggactacggaa 7324455  T
Q  209 atcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtttagacgccta 272  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  7324454 ataaagagtcttggactaaattgtatagtgttcctaacatgcaagatcgcggtttagaagccta 7324391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 2631222 - 2631432
Alignment:
Q  46 attctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcatacgatgaccttgggtgtcgtgagggatt 145  Q
    ||||||||||| |||||||| || |||||||||||| | |||| || ||||||||| ||  |||||    || |   ||| ||||||||  |||| ||||    
T  2631222 attctttctcttgatttagaaaatgagtcatatcaagagctttacccacctgatttcgaggatgagtcatattcctggacattgggtgtgctgagtgatt 2631321  T
Q  146 gcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaa 245  Q
     ||||||||| |||||| ||| ||||| | |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||| |    
T  2631322 acttgtgtgtctttgcaactagtgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctga 2631421  T
Q  246 catgcaagatc 256  Q
    |||||| ||||    
T  2631422 catgcacgatc 2631432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 7443072 - 7442946
Alignment:
Q  137 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatag 236  Q
    ||||||||||||||||||| | || ||||| ||||  | |||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  7443072 tgagggattgcttgtgtgtctatgaagctagtgatttgttttttaatgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatag 7442973  T
Q  237 tgttcctaacatgcaagatcggggttt 263  Q
    ||||||||| |||||| ||||| ||||    
T  7442972 tgttcctaaaatgcaacatcggcgttt 7442946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 256
Target Start/End: Complemental strand, 9594811 - 9594600
Alignment:
Q  45 tattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcatacgatgaccttgggtgtcgtgagggat 144  Q
    |||||||||||| | ||||||| | |||||||||| |||||||||||| ||||||| ||||||||||    || |   ||  |||| |||  ||||||||    
T  9594811 tattctttctcttgctttagaggatgagtcatatcgacaacttttcctccctgattctgataatgagtcatattcatggaggttggatgtgctgagggat 9594712  T
Q  145 tgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttccta 244  Q
    ||||||||||| |||| | ||| ||||| | |||| |||||||||||||||||  |||| ||||||  ||||||||||||||||||||    ||||||||    
T  9594711 tgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttccatgttccta 9594612  T
Q  245 acatgcaagatc 256  Q
    ||||||||||||    
T  9594611 acatgcaagatc 9594600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 266
Target Start/End: Complemental strand, 2659332 - 2659118
Alignment:
Q  52 tctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgt 151  Q
    ||||| ||||||||||||||||| |||||| | |||   ||||||||||| || ||||| | | || ||  |  | ||||||| ||||||||||||||||    
T  2659332 tctcttgatttagagaaggagtcgtatcaaaagcttcggctacctgatttcgacaatgaaaataattcgtgggacgtgggtgtggtgagggattgcttgt 2659233  T
Q  152 gtgtttttgcagctattgataggattttca-atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgc 250  Q
    |||| ||||||  || |||| | || ||   |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||| |||    
T  2659232 gtgtctttgcaagtagtgat-gaatattgggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcctaacctgc 2659134  T
Q  251 aagatcggggtttaga 266  Q
    |||||| || ||||||    
T  2659133 aagatcaggatttaga 2659118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 9562210 - 9561951
Alignment:
Q  1 tttgttagtggcactgttaattggttggcattttatcattcacatattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgatt 100  Q
    ||||| ||||||||||||||||||||||||  | || |||||  |||||| ||||| ||| ||||||||||||| ||||||||  |||| |||||||||     
T  9562210 tttgtgagtggcactgttaattggttggcaagtgatgattcatttattctctctcttgatgtagagaaggagtcgtatcaacaggttttgctacctgata 9562111  T
Q  101 ttgataatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaagga 200  Q
      || |||||    | |  |  || |||||||||  | ||| ||||||||||| | || ||  ||| | ||  | ||||  |||||||||||||||| ||    
T  9562110 ccgagaatga----cttgtg--gatcttgggtgtgctaaggaattgcttgtgtatcttagctactagtaatttgtttttggatgtttggattatgaatga 9562017  T
Q  201 gtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtttaga 266  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  9562016 gtatggaaatcaagagtcttggactaaattatacagtgttcctaacatgcaagatcacggtttaga 9561951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 2644457 - 2644338
Alignment:
Q  137 tgagggattgcttgtgtgtttttgcagctattgataggat-tttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtata 235  Q
    ||||||||||||||||||| |||||| ||| |||| | || |||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  2644457 tgagggattgcttgtgtgtctttgcaactagtgat-gaatatttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtaca 2644359  T
Q  236 gtgttcctaacatgcaagatc 256  Q
     | |||||||| |||||||||    
T  2644358 ctattcctaacctgcaagatc 2644338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 266
Target Start/End: Original strand, 2635595 - 2635806
Alignment:
Q  58 gatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcata------cgatgaccttgggtgtcgtgagggattgcttgt 151  Q
    ||||||||||||||||| |||| ||||||||  ||||||||||| || ||||||| | | |      ||  || ||||| |||  ||||| ||||| |||    
T  2635595 gatttagagaaggagtcgtatcgacaactttggctacctgatttcgagaatgagaatgaaaatggtccgtggatcttggatgtgatgaggaattgcatgt 2635694  T
Q  152 gtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgca 251  Q
    |||| |||||| ||| ||||  | ||||  ||||||||||||||   |||||||||| |  ||||||||||||||||||||| |||||||||||||||||    
T  2635695 gtgtctttgcaactagtgatgtgtttttggatgtttggattatg---gagtatggaagtgaagagtcttggactaaattgtacagtgttcctaacatgca 2635791  T
Q  252 agatcggggtttaga 266  Q
    | |||||||||||||    
T  2635792 acatcggggtttaga 2635806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 9565934 - 9565800
Alignment:
Q  127 ttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggacta 226  Q
    |||||| | ||||||| |||||||||||| ||||||  || ||||| |  | |  |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  9565934 ttgggtttggtgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggacta 9565835  T
Q  227 aattgtatagtgttcctaacatgcaagatcggggt 261  Q
    ||||||| | |||||||||||| ||||||| ||||    
T  9565834 aattgtacattgttcctaacatacaagatcagggt 9565800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2474926 - 2475014
Alignment:
Q  1 tttgttagtggcactgttaattggttggcattttatcattcacatattctttctctcgatttagagaaggagtcatatcaacaactttt 89  Q
    ||||| ||||||||||| ||||||||| ||  | || |||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2474926 tttgtgagtggcactgtaaattggttgccaagtgattattcacgtattctttctcttgatttagagaaggagtcatatcaacaactttt 2475014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 266
Target Start/End: Complemental strand, 7334425 - 7334205
Alignment:
Q  46 attctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcatacgatgaccttgggtgtcgtgagggatt 145  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||| ||| ||||| | |  |  |  ||  |||| | | ||||||||||    
T  7334425 attctttctcttgatttagagaaagagtcatatcagcaacttttcctacctaattatgagaatgaaaatgttcagtggattttggatatggtgagggatt 7334326  T
Q  146 gcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaa 245  Q
    |||||||||| |||||   || |||||    ||   |||||||||| |||||||| || ||||||  ||||||||||||||||||||| | | |||||||    
T  7334325 gcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaa 7334226  T
Q  246 catgcaagatcggggtttaga 266  Q
    | || ||||||| ||||||||    
T  7334225 cctgaaagatcgtggtttaga 7334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 768515 - 768329
Alignment:
Q  46 attctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcata-cgat-gaccttgggtgtcgtgaggga 143  Q
    ||||||||||| ||||||||||| || ||||||| | | |||| ||||||||||||| | ||||||  ||||  || | ||  ||||||||  |||||||    
T  768515 attctttctcttgatttagagaatgactcatatcgagagctttacctacctgatttttagaatgag--tcatgtcgctcgaagttgggtgtgttgaggga 768418  T
Q  144 ttgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||| ||||   ||| ||| | | |||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  768417 ttgcttgtgtgtatttgacactagtgaaatgttttttaatgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgt 768329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 746422 - 746352
Alignment:
Q  193 atgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 263  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||| | |||||| |||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgtacattgttcctaacctacaagattggggttt 746352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 754659 - 754585
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 256  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||  |||| |||||||    
T  754659 atgtttggattatgaaggagtatggagatcaagagtcttggactaaattgtacattgttcccgacatacaagatc 754585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 7942486 - 7942567
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 263  Q
    ||||||||||||||||||||||||| |||  ||||||||||| ||||||||| | ||||||| ||||| ||||||| |||||    
T  7942486 atgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatcgaggttt 7942567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 43991961 - 43992022
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||||||||||||||||||    
T  43991961 atgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttcct 43992022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 1891114 - 1891040
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 256  Q
    |||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||||| || |||||| |||||    
T  1891114 atgtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatgcgagatc 1891040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 7443176 - 7443121
Alignment:
Q  45 tattctttctctcgatttagagaaggagtcatatcaacaacttttcctacctgatt 100  Q
    |||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||    
T  7443176 tattctttctcttgatttagaaaaggagtcgtatcaaaaacttttcctacctgatt 7443121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 754795 - 754745
Alignment:
Q  46 attctttctctcgatttagagaaggagtcatatcaacaacttttcctacct 96  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  754795 attctttctcttgatttagagaaggagtcatatcaacatcttttgctacct 754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 2442040 - 2442090
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2442040 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 2502017 - 2502200
Alignment:
Q  50 tttctctcgatttagagaaggagtcatatcaacaacttttcctacctgattttgataatgagagtcatacgatgaccttgggtgtcgtgagggattgctt 149  Q
    ||||||| ||||||||||||||||||| |||| | |||| || |||||| ||||  ||||| | | ||  |  ||  ||||||||  | |||||||||||    
T  2502017 tttctcttgatttagagaaggagtcatgtcaagagctttgcccacctgactttgggaatgaaaataattggtggaatttgggtgtgctcagggattgctt 2502116  T
Q  150 gtgtgtttttgcagctattgataggattttca-atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    |||||| ||||||| || |||| | || ||   |||||||||||||||||||||||||||||   |||| |||||||||| ||||    
T  2502117 gtgtgtctttgcaggtagtgat-gaatattgggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgta 2502200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 13498225 - 13498273
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  13498225 atgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 783849 - 783782
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatg 249  Q
    ||||||||||||||||||| |||||||||  | || | |||||||||||||||| ||||||| |||||    
T  783849 atgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatg 783782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 2696782 - 2696732
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  2696782 atgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 2696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 3754601 - 3754651
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  3754601 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 4142184 - 4142134
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  4142184 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4142134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 4157994 - 4157944
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  4157994 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 12133098 - 12133148
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  12133098 atgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgt 12133148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 2459277 - 2459326
Alignment:
Q  183 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||||||| |||||||||  |||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgt 2459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 771549 - 771498
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||||||    
T  771549 atgtttgggttatgaaggaatatggaaatacagactcttggactaaattgta 771498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 2456250 - 2456301
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||||||    
T  2456250 atgtttgggttatgaaggaatatggaaataaagactcttggactaaattgta 2456301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 3746012 - 3746059
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  3746012 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 3746059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 7430586 - 7430535
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    ||||||||||||||||| |||||||||||  | |||||| ||||||||||||    
T  7430586 atgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgta 7430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43991768 - 43991803
Alignment:
Q  1 tttgttagtggcactgttaattggttggcattttat 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  43991768 tttgtgagtggcactgttaattggttggcattttat 43991803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 9608394 - 9608336
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 240  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||| || ||||||    
T  9608394 atgtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtt 9608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 37753395 - 37753345
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||| |||| ||||||||   ||||||||||||||||||||    
T  37753395 atgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 7398228 - 7398179
Alignment:
Q  183 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||||| | ||||||||||||||||||  ||||||||||| ||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgt 7398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 9587233 - 9587184
Alignment:
Q  184 gtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    ||||||||||||||||| |||||||||  |||| ||||||| ||||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgta 9587184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 7427792 - 7427756
Alignment:
Q  45 tattctttctctcgatttagagaaggagtcatatcaa 81  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  7427792 tattgtttctcttgatttagagaaggagtcatatcaa 7427756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 12217891 - 12217927
Alignment:
Q  45 tattctttctctcgatttagagaaggagtcatatcaa 81  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  12217891 tattgtttctcttgatttagagaaggagtcatatcaa 12217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 37757781 - 37757725
Alignment:
Q  187 tggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    |||||||||||||| ||||||||   |||||||||||| || ||||| |||||||||    
T  37757781 tggattatgaaggaatatggaaacaaagagtcttggacgaagttgtacagtgttcct 37757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 33020269 - 33020395
Alignment:
Q  137 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatag 236  Q
    ||||||||||||||||  | ||||||  || ||||| | |||| ||||| |||||||||||||| |||||||||  | |||||||||||| ||||||  |    
T  33020269 tgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccg 33020368  T
Q  237 tgttcctaacatgcaagatcggggttt 263  Q
    ||||||| ||||| |||||||||||||    
T  33020369 tgttccttacatggaagatcggggttt 33020395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 33038116 - 33038242
Alignment:
Q  137 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatag 236  Q
    ||||||||||||||||  | ||||||  || ||||| | ||||  ||||||||||||||||||| ||||||||   | |||||||||||| ||||||  |    
T  33038116 tgagggattgcttgtgcatctttgcaagtagtgatatgttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccg 33038215  T
Q  237 tgttcctaacatgcaagatcggggttt 263  Q
    ||||||| ||||| |||||||||||||    
T  33038216 tgttccttacatggaagatcggggttt 33038242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 34560959 - 34560900
Alignment:
Q  190 attatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatg 249  Q
    |||||||| || |||||||||  | | |||||||||||||||||||||||||||||||||    
T  34560959 attatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcctaacatg 34560900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 6538844 - 6538902
Alignment:
Q  191 ttatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatg 249  Q
    ||||||||||||||||||||  ||| ||||||||||||||||  |||||| ||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 36577367 - 36577417
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  36577367 atgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 11237688 - 11237744
Alignment:
Q  176 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||| |||||||| ||||| |||||||||||||| ||||  |||||||||||||||    
T  11237688 ttttcgatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgt 11237744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 7156242 - 7156175
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatg 249  Q
    |||||||| ||||||||||||||||||||  ||| |||||| |||||||||   |||||||| |||||    
T  7156242 atgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatg 7156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 7160804 - 7160754
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||    
T  7160804 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 7160754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 33026658 - 33026739
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 263  Q
    |||||||| |||||||| | |||||||||  | |||||||||||| ||||||  |||||||| ||||| |  ||||||||||    
T  33026658 atgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatggacaatcggggttt 33026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 89147 - 89225
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 263  Q
    ||||| |||||||||| |||||||||  ||||||||||||||||||||| | ||||||| ||||| ||||||| |||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatcgtggttt 89225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 11081814 - 11081881
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatg 249  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||| || | ||||| |||||    
T  11081814 atgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 23766912 - 23766862
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||||| || |||||||||  ||||||||||||||||||||    
T  23766912 atgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 23816760 - 23816710
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||||||||||| || |||||||||  ||||||||||||||||||||    
T  23816760 atgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 20292996 - 20293044
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    ||||||||||||||||||| ||||||| |  ||||||||||||||||||    
T  20292996 atgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 2067102 - 2067051
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 233  Q
    |||||||||||||||||||||||||||||  || |||||||| |||| ||||    
T  2067102 atgtttggattatgaaggagtatggaaatgtagggtcttggattaaactgta 2067051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 23769696 - 23769646
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  23769696 atgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 23819544 - 23819494
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    ||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  23819544 atgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 3181718 - 3181767
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattg 231  Q
    |||||||| |||||||||| |||||||||  ||||||||||| |||||||    
T  3181718 atgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 20301444 - 20301492
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    ||||||||||||||||||| |||| || |  ||||||||||||||||||    
T  20301444 atgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 20305857 - 20305905
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    |||| |||||||||||||| ||||||| |  ||||||||||||||||||    
T  20305857 atgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 20310261 - 20310309
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    |||| |||||||||||||| ||||||| |  ||||||||||||||||||    
T  20310261 atgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 1078210 - 1078160
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 232  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  1078210 atgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 39298978 - 39299058
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggtt 262  Q
    |||||||| || ||||||| | |||||||  |||||| ||||||||||| || ||||||||| ||||| |||||| |||||    
T  39298978 atgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatcagggtt 39299058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39298800 - 39298832
Alignment:
Q  1 tttgttagtggcactgttaattggttggcattt 33  Q
    ||||| |||||||||||||||||||||||||||    
T  39298800 tttgtgagtggcactgttaattggttggcattt 39298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 24417542 - 24417459
Alignment:
Q  176 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggg 259  Q
    |||| ||||||||||||||||| || |||||||||  ||| ||||||||||||||||| ||| |||   |||||||||| ||||    
T  24417542 ttttaaatgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaagaccggg 24417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 4183051 - 4182990
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  4183051 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 4182990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 4743895 - 4743834
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  4743895 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 4743834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 19119065 - 19119136
Alignment:
Q  183 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaaga 254  Q
    ||||||| | |||||||| |||||||||  |||||||||||||||||||| |  ||||||| ||||| ||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 19126359 - 19126430
Alignment:
Q  183 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaaga 254  Q
    ||||||| | |||||||| |||||||||  |||||||||||||||||||| |  ||||||| ||||| ||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaatt 230  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 20016232 - 20016161
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 256  Q
    ||||||| |||||||| ||||||| || ||||||||||||||||||||  | | || |||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatc 20016161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 20019822 - 20019748
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 256  Q
    |||||||| | |||||||| ||||||| || ||||||||||||||||||||  | | || |||||||||||||||    
T  20019822 atgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatc 20019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 51381502 - 51381424
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 263  Q
    ||||||||||||| || |||||||||  ||||||||||||||||||||  ||| ||||| ||||| ||| ||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttt 51381424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 51756800 - 51756739
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  51756800 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 51756739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 51858607 - 51858668
Alignment:
Q  182 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    |||||||||| |||||||| |||||||||  ||| ||||||||||||||||  |||||||||    
T  51858607 atgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcct 51858668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 51762979 - 51762921
Alignment:
Q  185 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 243  Q
    ||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  51762979 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 51762921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 51407604 - 51407543
Alignment:
Q  187 tggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacat 248  Q
    |||||||||||||| ||||| |||  | ||||||||||||||||||  ||||||||| ||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 51407543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 2138 - 2196
Alignment:
Q  176 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtat 234  Q
    |||| |||||||||  ||||||||| |||||||||  ||||||||||||||||| ||||    
T  2138 ttttgaatgtttgggctatgaaggaatatggaaatgtagagtcttggactaaatcgtat 2196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 4633 - 4691
Alignment:
Q  176 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtat 234  Q
    |||| |||||||||  ||||||||| |||||||||  ||||||||||||||||| ||||    
T  4633 ttttgaatgtttgggctatgaaggaatatggaaatgtagagtcttggactaaatcgtat 4691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University