View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18294_high_8 (Length: 260)
Name: NF18294_high_8
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18294_high_8 |
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| [»] scaffold0573 (1 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0573 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9829 - 10072
Alignment:
| Q |
1 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagacaaattagccaattcattcaaagcattcttccattcctgcaacttatcttcgcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9829 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagagaaattagccaattgattcaaagcattcttccattcctgcaacttatcttcgcta |
9928 |
T |
|
| Q |
101 |
taccaattgctcgctttatgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
9929 |
taccaattgctcgctttatgttcagccattgcttctccatacgttccttcttctgaccatctcacaattgaagggtcaacgtcataaaagattggccaaa |
10028 |
T |
|
| Q |
201 |
caaatcgaccccttccctttatgcatttaaggatatgacaaagt |
244 |
Q |
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||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
10029 |
caaatcgtccccttccatgtatgcatttaaggatatgacaaagt |
10072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28899965 - 28899722
Alignment:
| Q |
1 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagacaaattagccaattcattcaaagcattcttccattcctgcaacttatcttcgcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28899965 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagagaaattagccaattgattcaaagcattcttccattcctgcaacttatcttcgcta |
28899866 |
T |
|
| Q |
101 |
taccaattgctcgctttatgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
28899865 |
taccaattgctcgctttatgttcagccattgcttctccatacgttccttcttctgaccatctcacaattgaagggtcaacgtcataaaagattggccaaa |
28899766 |
T |
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| Q |
201 |
caaatcgaccccttccctttatgcatttaaggatatgacaaagt |
244 |
Q |
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||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
28899765 |
caaatcgtccccttccatgtatgcatttaaggatatgacaaagt |
28899722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30306 - 30066
Alignment:
| Q |
1 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagacaaattagccaattcattcaaagcattcttccattcctgcaacttatcttcgcta |
100 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| |
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| T |
30306 |
ataagaacatacataccctttcttccatttgtaaacggtaccagacaaattagccacttgattcaaagcattctcccattccttcaacttatcttcgcta |
30207 |
T |
|
| Q |
101 |
taccaattgctcgctttatgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaa |
200 |
Q |
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||||||||| || ||||||| |||||||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
30206 |
taccaattgttcttcttatgttcagccattgcttctccataagt---gtcttctaaccatctcacttttgaagggtcaacttcataaaagattggccaaa |
30110 |
T |
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| Q |
201 |
caaatcgaccccttccctttatgcatttaaggatatgacaaagt |
244 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
30109 |
caaatccaccccttccctctatgcatttaaggatatgacaaagt |
30066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 65890 - 65650
Alignment:
| Q |
1 |
ataagaatatacataccctgtcttccatttgtaaacggtaccagacaaattagccaattcattcaaagcattcttccattcctgcaacttatcttcgcta |
100 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||| |
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| T |
65890 |
ataagaacatacataccctctcttccatttgtgaacggtaccagacaaattagccacttgattcaaagcattcttccattcttgcaacttaatttcgcta |
65791 |
T |
|
| Q |
101 |
taccaattgctcgctttatgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaa |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||| | ||||| |||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
65790 |
taaacattgctcgctttatgtttagccattgcttctccata---actctcttccaaccatctcacatgtgaaggttcaacttcataaaagattggccaaa |
65694 |
T |
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| Q |
201 |
caaatcgaccccttccctttatgcatttaaggatatgacaaagt |
244 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
65693 |
caaatcgaccccttccctttatgcatttaagaatatgacaaagt |
65650 |
T |
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