View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18294_low_1 (Length: 641)

Name: NF18294_low_1
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18294_low_1
NF18294_low_1
[»] chr3 (28 HSPs)
chr3 (11-555)||(46404338-46404868)
chr3 (66-555)||(5004457-5004970)
chr3 (65-342)||(16975252-16975515)
chr3 (395-555)||(16975629-16975789)
chr3 (387-560)||(11937561-11937735)
chr3 (61-169)||(16475273-16475381)
chr3 (427-559)||(9104522-9104654)
chr3 (65-235)||(11967971-11968130)
chr3 (560-641)||(7336299-7336380)
chr3 (333-418)||(16975531-16975616)
chr3 (560-641)||(46404206-46404287)
chr3 (560-641)||(16975840-16975921)
chr3 (564-641)||(9104627-9104704)
chr3 (576-641)||(5004336-5004401)
chr3 (424-549)||(8731144-8731269)
chr3 (424-549)||(9083031-9083156)
chr3 (476-555)||(7336431-7336509)
chr3 (510-596)||(17542355-17542437)
chr3 (333-414)||(11937744-11937825)
chr3 (66-153)||(9104174-9104261)
chr3 (409-472)||(17542446-17542508)
chr3 (429-491)||(17542500-17542562)
chr3 (77-170)||(17542813-17542904)
chr3 (65-142)||(7337257-7337334)
chr3 (576-641)||(11937494-11937559)
chr3 (503-555)||(43277783-43277834)
chr3 (181-233)||(8730913-8730966)
chr3 (181-233)||(9082800-9082853)
[»] chr7 (29 HSPs)
chr7 (67-555)||(15873712-15874186)
chr7 (387-641)||(22077977-22078228)
chr7 (75-342)||(21491459-21491739)
chr7 (387-641)||(21491101-21491353)
chr7 (64-266)||(22077631-22077831)
chr7 (401-641)||(18366935-18367173)
chr7 (65-227)||(18367412-18367577)
chr7 (55-274)||(48576321-48576538)
chr7 (427-555)||(11036083-11036210)
chr7 (439-641)||(48653451-48653649)
chr7 (560-641)||(10288396-10288477)
chr7 (560-641)||(15873580-15873661)
chr7 (333-418)||(21491358-21491443)
chr7 (66-202)||(9993291-9993427)
chr7 (56-207)||(48654339-48654488)
chr7 (427-496)||(9993633-9993702)
chr7 (476-555)||(10288528-10288606)
chr7 (336-418)||(18367192-18367274)
chr7 (402-551)||(12911434-12911581)
chr7 (66-153)||(12196729-12196816)
chr7 (476-555)||(40106201-40106279)
chr7 (478-641)||(9993756-9993923)
chr7 (402-453)||(12196497-12196548)
chr7 (403-456)||(48653595-48653648)
chr7 (65-108)||(10289388-10289431)
chr7 (476-555)||(12196433-12196511)
chr7 (275-342)||(18367293-18367363)
chr7 (69-107)||(11036685-11036723)
chr7 (66-103)||(7503909-7503946)
[»] scaffold0413 (2 HSPs)
scaffold0413 (65-496)||(8839-9279)
scaffold0413 (611-641)||(1-31)
[»] chr6 (23 HSPs)
chr6 (67-555)||(34636188-34636656)
chr6 (61-342)||(25005139-25005429)
chr6 (65-342)||(23260544-23260829)
chr6 (240-555)||(10751297-10751636)
chr6 (66-342)||(32450228-32450512)
chr6 (387-641)||(32449871-32450122)
chr6 (417-555)||(23260351-23260489)
chr6 (410-540)||(26182392-26182522)
chr6 (560-641)||(10751165-10751246)
chr6 (560-641)||(34636707-34636788)
chr6 (439-641)||(13773037-13773235)
chr6 (67-166)||(26182602-26182700)
chr6 (333-411)||(32450134-32450212)
chr6 (333-378)||(23260483-23260528)
chr6 (429-574)||(24163272-24163416)
chr6 (439-519)||(20555629-20555709)
chr6 (66-141)||(11166587-11166662)
chr6 (65-118)||(10751623-10751676)
chr6 (67-231)||(24992418-24992578)
chr6 (403-452)||(13773185-13773234)
chr6 (589-641)||(20558043-20558095)
chr6 (560-588)||(23260272-23260300)
chr6 (601-641)||(24164347-24164387)
[»] chr5 (20 HSPs)
chr5 (147-555)||(536895-537289)
chr5 (67-227)||(536731-536891)
chr5 (333-641)||(4557611-4557919)
chr5 (47-342)||(4557935-4558241)
chr5 (560-641)||(537340-537421)
chr5 (500-596)||(25101579-25101671)
chr5 (500-596)||(25160672-25160764)
chr5 (66-153)||(27026621-27026708)
chr5 (402-555)||(30910117-30910267)
chr5 (403-472)||(6309116-6309184)
chr5 (576-638)||(42861880-42861942)
chr5 (503-554)||(104702-104753)
chr5 (402-555)||(38001301-38001449)
chr5 (439-540)||(42861769-42861869)
chr5 (429-479)||(6308999-6309049)
chr5 (532-587)||(6309107-6309166)
chr5 (476-554)||(40691266-40691343)
chr5 (403-456)||(42861770-42861823)
chr5 (406-454)||(6309083-6309130)
chr5 (503-559)||(6309186-6309241)
[»] chr1 (31 HSPs)
chr1 (223-555)||(37666915-37667271)
chr1 (65-342)||(35762015-35762303)
chr1 (387-641)||(35761658-35761909)
chr1 (55-266)||(9537406-9537615)
chr1 (64-201)||(37667265-37667401)
chr1 (387-559)||(19198447-19198622)
chr1 (66-233)||(16074710-16074879)
chr1 (502-641)||(18472542-18472677)
chr1 (560-641)||(43406972-43407053)
chr1 (560-639)||(37666785-37666864)
chr1 (564-641)||(6836422-6836499)
chr1 (333-414)||(35761918-35761999)
chr1 (560-641)||(338628-338709)
chr1 (440-555)||(16075097-16075211)
chr1 (65-188)||(21264718-21264841)
chr1 (67-170)||(6835953-6836056)
chr1 (476-555)||(43407104-43407182)
chr1 (429-491)||(6836246-6836308)
chr1 (446-557)||(28561778-28561890)
chr1 (402-555)||(338431-338577)
chr1 (476-555)||(9537128-9537206)
chr1 (471-551)||(25921874-25921953)
chr1 (476-554)||(8421953-8422030)
chr1 (402-456)||(16075096-16075150)
chr1 (481-543)||(26317615-26317677)
chr1 (65-142)||(338059-338135)
chr1 (502-555)||(33007388-33007440)
chr1 (65-142)||(43407930-43408007)
chr1 (564-623)||(19198416-19198474)
chr1 (510-559)||(6836401-6836449)
chr1 (66-107)||(8421574-8421615)
[»] chr4 (20 HSPs)
chr4 (387-641)||(49499403-49499655)
chr4 (66-266)||(28969233-28969431)
chr4 (99-342)||(49499045-49499297)
chr4 (440-641)||(2761714-2761911)
chr4 (560-641)||(40459471-40459552)
chr4 (333-418)||(49499313-49499398)
chr4 (426-555)||(40459293-40459420)
chr4 (429-491)||(69628-69690)
chr4 (560-623)||(55162712-55162774)
chr4 (403-472)||(69712-69780)
chr4 (502-555)||(55162571-55162623)
chr4 (476-555)||(28968976-28969059)
chr4 (560-641)||(28968845-28968925)
chr4 (503-574)||(42899892-42899960)
chr4 (503-559)||(69782-69837)
chr4 (65-153)||(40458905-40458992)
chr4 (564-623)||(69810-69868)
chr4 (479-553)||(13652928-13653002)
chr4 (479-553)||(13661053-13661127)
chr4 (532-587)||(69703-69762)
[»] chr2 (28 HSPs)
chr2 (65-217)||(32735391-32735543)
chr2 (439-641)||(12774044-12774244)
chr2 (402-555)||(18292431-18292582)
chr2 (439-555)||(28266848-28266964)
chr2 (560-641)||(40448001-40448082)
chr2 (435-521)||(29270993-29271079)
chr2 (57-233)||(1193590-1193765)
chr2 (66-170)||(12774954-12775056)
chr2 (55-170)||(28267692-28267804)
chr2 (532-641)||(35670395-35670501)
chr2 (566-641)||(36731836-36731911)
chr2 (402-555)||(40447804-40447950)
chr2 (476-551)||(40729168-40729242)
chr2 (476-555)||(41339990-41340068)
chr2 (133-225)||(29270702-29270792)
chr2 (589-641)||(41339856-41339908)
chr2 (439-542)||(35670502-35670604)
chr2 (47-141)||(23828298-23828392)
chr2 (403-456)||(12774190-12774243)
chr2 (65-142)||(40447432-40447508)
chr2 (403-472)||(44788932-44789000)
chr2 (447-491)||(44788866-44788910)
chr2 (402-456)||(36731989-36732043)
chr2 (476-552)||(34397559-34397632)
chr2 (403-456)||(35670550-35670603)
chr2 (560-641)||(40729033-40729113)
chr2 (564-641)||(44789030-44789106)
chr2 (523-559)||(44789021-44789057)
[»] chr8 (11 HSPs)
chr8 (447-641)||(40841131-40841322)
chr8 (403-587)||(44436442-44436620)
chr8 (503-641)||(22815931-22816064)
chr8 (65-170)||(22816487-22816590)
chr8 (427-488)||(35840649-35840710)
chr8 (502-555)||(41958159-41958211)
chr8 (500-586)||(22635692-22635774)
chr8 (133-233)||(35839168-35839268)
chr8 (64-141)||(20264999-20265076)
chr8 (64-141)||(21051628-21051705)
chr8 (68-153)||(40841568-40841652)
[»] scaffold1838 (1 HSPs)
scaffold1838 (111-266)||(221-374)
[»] scaffold0041 (1 HSPs)
scaffold0041 (476-641)||(32937-33100)
[»] scaffold0013 (2 HSPs)
scaffold0013 (503-641)||(242650-242783)
scaffold0013 (435-488)||(242883-242936)
[»] scaffold0120 (1 HSPs)
scaffold0120 (66-141)||(2645-2720)
[»] scaffold0002 (1 HSPs)
scaffold0002 (54-141)||(356884-356971)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Complemental strand, 46404868 - 46404338
Alignment:
Q  11 ggagcacagactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttt-ccccatacgttcttactaagtactaggat 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46404868 ggagtacagactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttttccccatacgttcttactaagtactaggat 46404769  T
Q  110 tatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404768 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 46404669  T
Q  210 tagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgtta 309  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  46404668 tagtttaattatattttatatgatatctgtatgataatgttttgtggaatggca-tttttctattcatatatgtttttgtggtattgtaaagaagtgtta 46404570  T
Q  310 gactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgcctta 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  46404569 gactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttc 46404470  T
Q  410 gtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttcca 509  Q
    |||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||| ||||||||| |||| ||| ||||| ||    
T  46404469 gtggcgggttaataatatatttctttgtg-------------gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttca 46404383  T
Q  510 tgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    || |  |||| | |||||||||||||||||||||||||||||||||    
T  46404382 tgtttgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 46404338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 66 - 555
Target Start/End: Complemental strand, 5004970 - 5004457
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 264  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 5004771  T
Q  265 -------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaat-----------------gaaaat 340  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||    
T  5004770 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatacgagttttacgaaaat 5004671  T
Q  341 atttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggt 440  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004670 atttcagtttggtccatgtggatgatgatgtgttaatatcttactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggt 5004571  T
Q  441 gccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtgg 540  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | | ||||| |||||||||||| | ||||||||||||||||||    
T  5004570 gccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 5004472  T
Q  541 tgccttagtggcggg 555  Q
    |||||||||||||||    
T  5004471 tgccttagtggcggg 5004457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 65 - 342
Target Start/End: Original strand, 16975252 - 16975515
Alignment:
Q  65 gaggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||     
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacg 16975451  T
Q  264 ttttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975452 t----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 395 - 555
Target Start/End: Original strand, 16975629 - 16975789
Alignment:
Q  395 tatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc-gggat 493  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |    
T  16975629 tatgcgtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggtt 16975728  T
Q  494 ttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||| | | ||||| ||||||||| || | |||||||||||||||||||||| ||||||||||    
T  16975729 ttagtctgcattttcatgatcatcca-tggcatatgcatctgtgtggtgccatagtggcggg 16975789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 387 - 560
Target Start/End: Complemental strand, 11937735 - 11937561
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11937735 tatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcatattgcattgttgtgcctaagtg 11937636  T
Q  487 gcgggatttaatgttcatt-tccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttatt 560  Q
    |  ||||||| | |||||| |  |||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  11937635 gttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtggtgcctgtgtggcgggttatt 11937561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 16475273 - 16475381
Alignment:
Q  61 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 160  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16475273 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 16475372  T
Q  161 actaaaata 169  Q
    |||||||||    
T  16475373 actaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 427 - 559
Target Start/End: Original strand, 9104522 - 9104654
Alignment:
Q  427 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcat 526  Q
    ||||||| ||||||||||| ||||| ||  || |||||||||| ||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||    
T  9104522 tatttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcat 9104621  T
Q  527 atgcatctgtgtggtgccttagtggcgggttat 559  Q
    |||||||||||||||||||  |||| |||||||    
T  9104622 atgcatctgtgtggtgcctgtgtggtgggttat 9104654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 11968130 - 11967971
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaac 162  Q
    |||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | |    
T  11968130 gaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatc 11968044  T
Q  163 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968043 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 7336380 - 7336299
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  7336380 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttgcacatcattgcatt 7336299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 333 - 418
Target Start/End: Original strand, 16975531 - 16975616
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggt 418  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||    
T  16975531 atgaaaatatttcagtttggttcatgtggatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggt 16975616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 46404287 - 46404206
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||    
T  46404287 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatttaagagcatgcgttttgcatatcattgcatt 46404206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 16975840 - 16975921
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  16975840 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtactatttaagagcatgcattttacacatcattgcatt 16975921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 564 - 641
Target Start/End: Original strand, 9104627 - 9104704
Alignment:
Q  564 tctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  9104627 tctgtgtggtgcctgtgtggtgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcatt 9104704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 641
Target Start/End: Complemental strand, 5004401 - 5004336
Alignment:
Q  576 ctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  5004401 ctgtgtggcgggttatatccggatcatgtagtatttaagagcatgcattttgcacatcattgcatt 5004336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 549
Target Start/End: Original strand, 8731144 - 8731269
Alignment:
Q  424 atatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattag 523  Q
    ||||| || ||||||||||||||| |||||| ||  |||||||||| ||||  ||  ||||||| || ||||| | ||||||| ||||||||||||||||    
T  8731144 atataattatttgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattag 8731243  T
Q  524 catatgcatctgtgtggtgccttagt 549  Q
    ||||  ||||| ||||||||||||||    
T  8731244 cataaacatctatgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 549
Target Start/End: Original strand, 9083031 - 9083156
Alignment:
Q  424 atatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattag 523  Q
    ||||| || ||||||||||||||| |||||| ||  |||||||||| ||||  ||  ||||||| || ||||| | ||||||| ||||||||||||||||    
T  9083031 atataattatttgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattag 9083130  T
Q  524 catatgcatctgtgtggtgccttagt 549  Q
    ||||  ||||| ||||||||||||||    
T  9083131 cataaacatctatgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 7336509 - 7336431
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||| |||| | | ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  7336509 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 7336431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 596
Target Start/End: Complemental strand, 17542437 - 17542355
Alignment:
Q  510 tgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccg 596  Q
    |||||||||||  ||||||| |||||||||||||||  |||||||||||||   |||||||||||||||||||||||  ||||||||    
T  17542437 tgatcatgcatc-gcatatgtatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtggcggtttatatccg 17542355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 11937825 - 11937744
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggc 414  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||  | | ||| ||||  |||||| |||||||||||||    
T  11937825 atgaaaatattttattttggttcatgtggatgatgatgtgttaatacatgattgtgtttgcttatgaggttgccttagtggc 11937744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 153  Q
    ||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 17542508 - 17542446
Alignment:
Q  409 agtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 472  Q
    |||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  17542508 agtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 17542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 491
Target Start/End: Complemental strand, 17542562 - 17542500
Alignment:
Q  429 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 491  Q
    ||||| ||||||||||| ||||| ||  || ||||||||||||||||||| ||||||||||||    
T  17542562 tttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcggg 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  77 ttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 170  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 7337334 - 7337257
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 142  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  7337334 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 7337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 576 - 641
Target Start/End: Complemental strand, 11937559 - 11937494
Alignment:
Q  576 ctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||| |||||||| || |||||| || ||||| |||||||||| ||||| ||||||||    
T  11937559 ctgtgtggcgggttatatccggatcatgtagaatataagaacatgcattttacacataattgcatt 11937494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 43277834 - 43277783
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||| ||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  43277834 attttcatgatcatacatga-catatgcatctgtgtggtgccttagtggcggg 43277783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  181 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 233  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  181 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 233  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 67 - 555
Target Start/End: Complemental strand, 15874186 - 15873712
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcattt 15873987  T
Q  267 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873986 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 15873887  T
Q  367 gatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatat 466  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||             |||||||||||||||    
T  15873886 gatgtgttaatatctgactgtatttgtctatgagtttgccttcgtggcgggttaataatatatttctttgtg-------------gggataacatcatat 15873800  T
Q  467 tgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| |||||||| ||||||||| |||| ||| ||||| |||| || |||| | |||||||||||||||||||||||||||||||||    
T  15873799 tgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 15873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 387 - 641
Target Start/End: Original strand, 22077977 - 22078228
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  487 gcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 586  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||  ||||||   | |||||| |||||||||||||||||||||    
T  22078077 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcg---tgttatttatgtgtggtgcctgtgtggcgg 22078173  T
Q  587 gatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||| || || ||||||||||||||||| ||||| ||||||||||||||    
T  22078174 gatatatccggatcatatagtatttaagagcatgtattttacacatcattgcatt 22078228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 75 - 342
Target Start/End: Complemental strand, 21491739 - 21491459
Alignment:
Q  75 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 172  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  173 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttcta 272  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| || ||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatgacatttatttta 21491541  T
Q  273 tt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    ||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491540 ttttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 387 - 641
Target Start/End: Complemental strand, 21491353 - 21491101
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  21491353 tatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcattgttgtgcctaagtg 21491254  T
Q  487 gcgggatttaatgttcatt-tccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcg 585  Q
    || ||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||  ||||||   | |||||||||||||||||||||||||||    
T  21491253 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcg---tgttatttctgtgtggtgcctgtgtggcg 21491157  T
Q  586 ggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    || ||| |||| || |||||| || ||| |||||||| ||| ||||| ||||||||    
T  21491156 ggttatttccggatcatgtagaatctaaaagcatgcaatttacacataattgcatt 21491101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 64 - 266
Target Start/End: Original strand, 22077631 - 22077831
Alignment:
Q  64 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||  ||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaact 22077728  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 263  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgaca 22077828  T
Q  264 ttt 266  Q
    |||    
T  22077829 ttt 22077831  T

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Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 401 - 641
Target Start/End: Complemental strand, 18367173 - 18366935
Alignment:
Q  401 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgt 500  Q
    |||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||||||||| |    
T  18367173 tttgtcttaggggcgggttaataatagatttctgtgtggtgccttagtggcaggataatatcatattgcattgttgtccctaagtggctggatttaatct 18367074  T
Q  501 tcatt-tccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaat 599  Q
    ||||| | |||||||| ||||||||||||| || |||||||||| |  |||| |||   ||||||||||||||||| ||||||||||| |||||||| ||    
T  18367073 tcattgttcatgatcacgcattagcatatgtatttgtgtggtgcatgggtggtggg---ttatttctgtgtggtgcatgtgtggcgggttatatccggat 18366977  T
Q  600 tatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
     |||||| || |||||||||||||||| ||||| ||||||||    
T  18366976 catgtagaatctaagagcatgcattttacacataattgcatt 18366935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac-aaaac--aa 161  Q
    ||||||||||||||||||| |||||| | || |||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  162 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 227  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 55 - 274
Target Start/End: Original strand, 48576321 - 48576538
Alignment:
Q  55 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 154  Q
    |||||||| | ||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| || ||| |||||       
T  48576321 taaagcgtataaggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag--- 48576417  T
Q  155 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgcatgataatgttatg 253  Q
    |||| || ||||||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| |||    
T  48576418 aaaataattaaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatg 48576517  T
Q  254 tggaatgacattttttctatt 274  Q
      ||||||||||| |||||||    
T  48576518 cagaatgacatttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 427 - 555
Target Start/End: Complemental strand, 11036210 - 11036083
Alignment:
Q  427 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcat 526  Q
    ||||||| ||||||||||| |||||| |  || ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  11036210 tatttctgtgtggtgcctt-gtggcgagtaaatatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcat 11036112  T
Q  527 atgcatctgtgtggtgccttagtggcggg 555  Q
    |||||||| ||||||||||||||||||||    
T  11036111 atgcatctctgtggtgccttagtggcggg 11036083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 439 - 641
Target Start/End: Complemental strand, 48653649 - 48653451
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||||||||||||||| |   | ||||| ||||||||||||| | |||||||||||||||    
T  48653649 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggattcatgatccattttcatgatcatgcataa-catatgcatctgtgt 48653551  T
Q  539 ggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgc 638  Q
    |||| ||  |||||||||||||   |||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| |||||    
T  48653550 ggtgtctgtgtggcgggttatt---tctgtgcggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcttgcattttacacataattgc 48653454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 10288477 - 10288396
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  10288477 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttacacatcattgcatt 10288396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 15873661 - 15873580
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  15873661 tatttccgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatttaagagcatgcattttgcatatcattgcatt 15873580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 418
Target Start/End: Complemental strand, 21491443 - 21491358
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggt 418  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| | ||| ||||  |||||| |||||||||||||||||    
T  21491443 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgaggttgccttagtggcgggt 21491358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||  ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataa 202  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 48654488 - 48654339
Alignment:
Q  56 aaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaaca 155  Q
    ||||| || |||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||||||| ||| |||||  |    
T  48654488 aaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--a 48654391  T
Q  156 aaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagtt 207  Q
    |||||||||||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654390 aaacaactaaaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 9993633 - 9993702
Alignment:
Q  427 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggattta 496  Q
    ||||||| ||||||||||| |||| |||  || |||||||||||||||||||||||||||||||||||||    
T  9993633 tatttctgtgtggtgcctttgtggtgggtaaatatcatattgcattgttgtgcctaagtggcgggattta 9993702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 10288606 - 10288528
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||| |||| | | ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  10288606 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 10288528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 18367274 - 18367192
Alignment:
Q  336 aaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggt 418  Q
    ||||||||||| |||||| ||| |||||||||||||||||||| || | ||| ||||  |||||| |||||||||||||||||    
T  18367274 aaaatatttcattttggttcatatggatgatgatgtgttaatacctgattgtgtttggttatgaggttgccttagtggcgggt 18367192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 551
Target Start/End: Complemental strand, 12911581 - 12911434
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgtt 501  Q
    ||||||||||| | ||||||||  ||||||||| ||||||||| ||||||||| ||  || ||||| |  ||| || ||| ||||||||| |||| | |     
T  12911581 ttgccttagtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctgtgtggtaccttagtggcgggttttagtctg 12911483  T
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtgg 551  Q
    ||||| ||| |||||| ||  |||||||||||||||||||||||||||||    
T  12911482 cattttcataatcatgtatg-gcatatgcatctgtgtggtgccttagtgg 12911434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 153  Q
    ||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||  |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Original strand, 40106201 - 40106279
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||  |||| | | ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  40106201 gtgccttagtggcggattttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 40106279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 641
Target Start/End: Original strand, 9993756 - 9993923
Alignment:
Q  478 gcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatt----tctgtgtgg- 572  Q
    ||||||||||||||||||| | ||||||  ||| |||||||||  |||||||||  | ||||||||||  ||| |||||||| |||    | | |||||     
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgcatg-gcatatgcacgtttgtggtgcctgtgtgacgggttataattatattttttgtgga 9993854  T
Q  573 tgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    | | ||||||||||| | |||||| || ||||||||||||| |||||||||||| |||  |||||||||    
T  9993855 tacatgtgtggcgggttttatccggatcatgtagtatttaaaagcatgcattttacacggcattgcatt 9993923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 12196548 - 12196497
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgg 453  Q
    |||||||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  12196548 ttgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcgg 12196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 48653648 - 48653595
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||||||    
T  48653648 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggat 48653595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 10289431 - 10289388
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactagga 108  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  10289431 gaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 12196511 - 12196433
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||  |||| | | ||||| ||||||||| |||  |||||| ||||||||||||||||||||||||||    
T  12196511 gtgccttagtggcggactttagtctgcattttcatgatcatacatg-gcatattcatctgtgtggtgccttagtggcggg 12196433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  275 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  69 taagggctttttccccatacgttcttactaagtactagg 107  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtac 103  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 65 - 496
Target Start/End: Original strand, 8839 - 9279
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 264  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacat 9038  T
Q  265 tt---------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 355  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9039 ttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattggtcc 9138  T
Q  356 atgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcggga 455  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9139 atgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcggga 9238  T
Q  456 taacatcatattgcattgttgtgcctaagtggcgggattta 496  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  9239 taacatcatattgcattattgtgccttagtggcgggtttta 9279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 641
Target Start/End: Original strand, 1 - 31
Alignment:
Q  611 taagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||||||||||    
T  1 taagagcatgcattttgcacatcattgcatt 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 67 - 555
Target Start/End: Original strand, 34636188 - 34636656
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacattt 34636387  T
Q  267 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 366  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636388 tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 34636481  T
Q  367 gatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatat 466  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||    
T  34636482 gatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtg-------------gggataacatcatat 34636568  T
Q  467 tgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| |||||||| ||||||||| |||| ||| ||||| |||| || |||| | |||||||||||||||||||||||||||||||||    
T  34636569 tgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 34636656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 25005139 - 25005429
Alignment:
Q  61 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 160  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25005139 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 25005238  T
Q  161 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatg 260  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 25005338  T
Q  261 acat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    ||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005339 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 65 - 342
Target Start/End: Complemental strand, 23260829 - 23260544
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacat 23260630  T
Q  265 --------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
            |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260629 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 240 - 555
Target Start/End: Complemental strand, 10751636 - 10751297
Alignment:
Q  240 atgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 331  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  332 aatgaaaata-----------------tttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggc 414  Q
    ||||||||||                 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10751536 aatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggc 10751437  T
Q  415 gggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatc 514  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | | ||||| |||||||    
T  10751436 tggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatc 10751337  T
Q  515 atgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| | |||||||||||||||||||||||||||||||||    
T  10751336 atgca-tggcatatgcatctgtgtggtgccttagtggcggg 10751297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 66 - 342
Target Start/End: Complemental strand, 32450512 - 32450228
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 264  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||     
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgacatt 32450314  T
Q  265 -------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450313 tattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 387 - 641
Target Start/End: Complemental strand, 32450122 - 32449871
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450122 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 32450023  T
Q  487 gcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 586  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||    
T  32450022 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggt---tatttctgtgtggtgcctgtgtggcgg 32449926  T
Q  587 gatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  32449925 gatatatccggatcatgtagtatctaagagcatgcattttacacatcattgcatt 32449871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 417 - 555
Target Start/End: Complemental strand, 23260489 - 23260351
Alignment:
Q  417 gttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc-gggatttaatgttcatttccatgatca 515  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| | ||| |||| | | ||||| ||||||||    
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  516 tgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||| | |||||||||||||||||||||||||||||||||    
T  23260389 tgca-tggcatatgcatctgtgtggtgccttagtggcggg 23260351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 410 - 540
Target Start/End: Complemental strand, 26182522 - 26182392
Alignment:
Q  410 gtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttcca 509  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||   ||||| ||||||| | ||||||| ||    
T  26182522 gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatcatattgcattgttgtgccactgtggcaggatttagtcttcattttca 26182423  T
Q  510 tgatcatgcattagcatatgcatctgtgtgg 540  Q
    |||||||||||||   |||||||||||||||    
T  26182422 tgatcatgcattaatgtatgcatctgtgtgg 26182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 10751246 - 10751165
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  10751246 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatttaagagcatgcattttgcacatcattgcatt 10751165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 34636707 - 34636788
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  34636707 tatttctgtgtggtgcctatgtggcgggatatatccggatcatgtagtatttaagagcatgcattttgcacatcattgcatt 34636788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 439 - 641
Target Start/End: Complemental strand, 13773235 - 13773037
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    |||||||||||||||| |||  | ||| | | |||| |||||||||||||| |||  |   | ||||| ||||||||||||| ||||||| |||||||||    
T  13773235 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgagatccatgatccattttcatgatcatgcat-agcatatacatctgtgt 13773137  T
Q  539 ggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgc 638  Q
    |||||||  |||||||   |||| ||||||||||||| ||||||| ||  |||||||| || |||||||||||||||||||||||||| ||||| |||||    
T  13773136 ggtgcctgtgtggcgg---attacttctgtgtggtgcttgtgtggtggattatatccggatcatgtagtatttaagagcatgcattttacacataattgc 13773040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 32450212 - 32450134
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagt 411  Q
    |||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  32450212 atgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttgcctatgagtttgtcttagt 32450134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 23260528 - 23260483
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaata 378  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23260528 atgaaaatatttcagtttggttcatgtggatgatgatgtgttaata 23260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 574
Target Start/End: Original strand, 24163272 - 24163416
Alignment:
Q  429 tttctttgtggt-gccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttc-catgatcatgcattagcat 526  Q
    |||||||||||| | |||||||  ||| ||| ||||||||   |||| |||  |||||||||||||||| | |||||||  |||||| ||||||||||||    
T  24163272 tttctttgtggttgtcttagtgatgggttaatatcatattattttgtggtgtttaagtggcgggatttagtcttcatttttcatgattatgcattagcat 24163371  T
Q  527 atgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtg 574  Q
    ||| |||||||||||| ||||||| | |   |||||||||||||||||    
T  24163372 atgtatctgtgtggtgtcttagtgacag---attatttctgtgtggtg 24163416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 519
Target Start/End: Original strand, 20555629 - 20555709
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgca 519  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||| |||| |||||||| | ||||||  ||| ||||||||    
T  20555629 gtgctttagtggcgggataatatcatattgcattgttgtgtctatgtggtgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 10751676 - 10751623
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 118  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 231  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 13773234 - 13773185
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcg 452  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||    
T  13773234 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcg 13773185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 20558043 - 20558095
Alignment:
Q  589 tatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||| || ||||||||||||||||||||  ||||  |||||||||||||    
T  20558043 tatatccggatcatgtagtatttaagagcatgtgttttatacatcattgcatt 20558095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 588
Target Start/End: Complemental strand, 23260300 - 23260272
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcggga 588  Q
    |||||||||||||||||||||||||||||    
T  23260300 tatttctgtgtggtgcctgtgtggcggga 23260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 601 - 641
Target Start/End: Original strand, 24164347 - 24164387
Alignment:
Q  601 atgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  24164347 atgtagtatttaagagcatgtattttacacataattgcatt 24164387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 147 - 555
Target Start/End: Original strand, 536895 - 537289
Alignment:
Q  147 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  247 tgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 346  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 537094  T
Q  347 gtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgcctta 446  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  537095 gtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtg-------- 537186  T
Q  447 gtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgcctt 546  Q
         ||||||||||||||||||||| |||||||| ||||||||| |||| ||| ||||| |||| || |||| | ||||||||||||||||||||||||    
T  537187 -----gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtggtgcctt 537280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 333 - 641
Target Start/End: Complemental strand, 4557919 - 4557611
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggt--taataatatatt 430  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||| || | ||| ||||  |||||| |||||||||||||||||  ||||||||||||    
T  4557919 atgaaaatatttcattttggttcatgtggatgatgatatgttaatacctgattgtgtttgcttatgaggttgccttagtggcgggtattaataatatatt 4557820  T
Q  431 tctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatt-tccatgatcatgcattagcatatg 529  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | |||||| | ||||||||||||||||||||||    
T  4557819 tctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatg 4557720  T
Q  530 catctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgca 629  Q
    ||||| ||||||||||  ||||||||   ||||||||||||||||||||||||||||| |||||| | |  |||||| || ||||||||||||| || |     
T  4557719 catctctgtggtgcctgtgtggcggg---ttatttctgtgtggtgcctgtgtggcgggttatatctggaccatgtagaatctaagagcatgcatcttacg 4557623  T
Q  630 catcattgcatt 641  Q
    ||| ||||||||    
T  4557622 cataattgcatt 4557611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 47 - 342
Target Start/End: Complemental strand, 4558241 - 4557935
Alignment:
Q  47 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttg 146  Q
    |||||||||||| |||  ||||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttg 4558143  T
Q  147 aaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgata 245  Q
    | |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || |||    
T  4558142 agaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataata 4558043  T
Q  246 atgttatgtggaatgacattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaat 334  Q
    |||||| || ||||||| ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||    
T  4558042 atgttacgtagaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaat 4557943  T
Q  335 gaaaatat 342  Q
    ||||||||    
T  4557942 gaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 537340 - 537421
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  537340 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatataagagcatgcattttgcacatcattgcatt 537421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 596
Target Start/End: Complemental strand, 25101671 - 25101579
Alignment:
Q  500 ttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccg 596  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||  |||||||||||||   ||||||||||||||||||| |||| ||||||||    
T  25101671 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtgacgggttatatccg 25101579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 596
Target Start/End: Complemental strand, 25160764 - 25160672
Alignment:
Q  500 ttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccg 596  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||  |||||||||||||   ||||||||||||||||||| |||| ||||||||    
T  25160764 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtgacgggttatatccg 25160672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 153  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||  ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 402 - 555
Target Start/End: Original strand, 30910117 - 30910267
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcat-tgttgtgcctaagtggcgggatttaatgt 500  Q
    |||||||||||||  |||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  || ||| |||||| |||||||| ||||| | |    
T  30910117 ttgccttagtggcaagttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt--atgtgtggtgccttagtggcgg-atttagtct 30910213  T
Q  501 tcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
     |||||||||||||||||||  |||||||||||||||||||  |||||| |||||    
T  30910214 gcatttccatgatcatgcatg-gcatatgcatctgtgtggtctcttagtagcggg 30910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 472  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 638
Target Start/End: Original strand, 42861880 - 42861942
Alignment:
Q  576 ctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgc 638  Q
    |||||||||||| |||||||  || |||||||||||||||||||||||||| ||||| |||||    
T  42861880 ctgtgtggcgggttatatccagatcatgtagtatttaagagcatgcattttacacataattgc 42861942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 554
Target Start/End: Original strand, 104702 - 104753
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgg 554  Q
    |||| |||||||||| |||||||||||||||| |||||||||||| ||||||    
T  104702 attttcatgatcatgtattagcatatgcatctctgtggtgccttaatggcgg 104753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 555
Target Start/End: Original strand, 38001301 - 38001449
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgtt 501  Q
    |||||||||||||||||||||| ||||| ||  |||||||| ||||||||| | ||  || ||||| |  ||| ||| || ||||||||| |||||| |     
T  38001301 ttgccttagtggcgggttaatattatatatccgtgtggtgctttagtggcgagttataattatatt-ctgtgtggtgtcttagtggcgggttttaatctg 38001399  T
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||  |||| | ||||||||||||||||||| | ||||||||||    
T  38001400 cattttcatgatc--gcatga-catatgcatctgtgtggtgtc-tagtggcggg 38001449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 540
Target Start/End: Original strand, 42861769 - 42861869
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||| ||||||||||| |   | ||||| ||||||||||||| |||||||||||||||||    
T  42861769 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgt 42861867  T
Q  539 gg 540  Q
    ||    
T  42861868 gg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 6308999 - 6309049
Alignment:
Q  429 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgc 479  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||    
T  6308999 tttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgc 6309049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 587
Target Start/End: Original strand, 6309107 - 6309166
Alignment:
Q  532 tctgtgtggtgccttagtggcgggttattat----ttctgtgtggtgcctgtgtggcggg 587  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||  ||||||||    
T  6309107 tctgtgtggtgccttagtggcgggttactattatattctgtgtggtgccttagtggcggg 6309166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 40691266 - 40691343
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgg 554  Q
    |||||| |||| |||| |||| | | ||||| ||||||||||||   ||||||||||||||||||||||||| ||||||    
T  40691266 gtgccttagtgacgggttttagtctgcattttcatgatcatgcaag-gcatatgcatctgtgtggtgccttattggcgg 40691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 42861770 - 42861823
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  42861770 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 42861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 6309083 - 6309130
Alignment:
Q  406 cttagtggcgggttaataatatatttctttgtggtgccttagtggcggg 454  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||    
T  6309083 cttagtggcgggttactattatatt-ctgtgtggtgccttagtggcggg 6309130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 559
Target Start/End: Original strand, 6309186 - 6309241
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttat 559  Q
    |||| |||||||||||||  |||||||||||||||||||| ||  ||||||||||||    
T  6309186 attttcatgatcatgcatg-gcatatgcatctgtgtggtgtctgtgtggcgggttat 6309241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 223 - 555
Target Start/End: Complemental strand, 37667271 - 37666915
Alignment:
Q  223 ttttatatgatgtctgcatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 314  Q
    |||||||||||||||| ||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  315 tgctgataaactaaataaatgaaaatat-----------------ttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctat 397  Q
    ||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaaaatctgactgtatttgtctat 37667072  T
Q  398 gagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaa 497  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||     
T  37667071 gagtttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggattttag 37666972  T
Q  498 tgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    | | ||||| |||||||||||| |  ||||||||||||||||||||||||||||||||    
T  37666971 tctgcattttcatgatcatgca-tgtcatatgcatctgtgtggtgccttagtggcggg 37666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 65 - 342
Target Start/End: Complemental strand, 35762303 - 35762015
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 262  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgac 35762104  T
Q  263 at--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    ||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762103 atttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 387 - 641
Target Start/End: Complemental strand, 35761909 - 35761658
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  35761909 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgcattgttgtgcctaagtg 35761810  T
Q  487 gcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 586  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||    
T  35761809 gcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggt---tatttctgtgtggtgcctgtgtggcgg 35761713  T
Q  587 gatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||| || ||||||||| ||||||||| |||||| ||||||||||||||    
T  35761712 gatatatccggatcatgtagtatctaagagcatacattttacacatcattgcatt 35761658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 55 - 266
Target Start/End: Complemental strand, 9537615 - 9537406
Alignment:
Q  55 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 154  Q
    |||||||| | | |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||     
T  9537615 taaagcgtatcaagtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa- 9537517  T
Q  155 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgt 254  Q
     |||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  9537516 -aaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  255 ggaatgacattt 266  Q
     |||||||||||    
T  9537417 agaatgacattt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  64 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttata 201  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 387 - 559
Target Start/End: Complemental strand, 19198622 - 19198447
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcat---attgcattgttgtgcctaa 483  Q
    |||||| |||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||    
T  19198622 tatttgactatgcatttgccttaatgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatcatattgcattgttgtacctaa 19198523  T
Q  484 gtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttat 559  Q
    ||||||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  19198522 gtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgtgtggtgcctgtgtggcgggttat 19198447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaac 162  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  163 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 233  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 502 - 641
Target Start/End: Complemental strand, 18472677 - 18472542
Alignment:
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaatta 601  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||   ||||||||||||   |||||||||||||| ||||||||| |||||||| || |    
T  18472677 cattttcatgatcatgcat-agcatatgcatctgtgtggtgcctgtatggcgggttatt---tctgtgtggtgcctatgtggcgggttatatccggatca 18472582  T
Q  602 tgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||| |||||| ||||| ||||||||    
T  18472581 tgtagtatttaagagcatacattttacacataattgcatt 18472542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 43407053 - 43406972
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  43407053 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttacacatcattgcatt 43406972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 560 - 639
Target Start/End: Complemental strand, 37666864 - 37666785
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgca 639  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||    
T  37666864 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttacacatcattgca 37666785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 564 - 641
Target Start/End: Original strand, 6836422 - 6836499
Alignment:
Q  564 tctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  6836422 tctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcatt 6836499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 35761999 - 35761918
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggc 414  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  35761999 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttgcctatgagtttgccttagtggc 35761918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 338628 - 338709
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||||||||||| ||||||||||||||    
T  338628 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtacctaagagcatgcattttacacatcattgcatt 338709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 555
Target Start/End: Original strand, 16075097 - 16075211
Alignment:
Q  440 tgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtg 539  Q
    ||||||| ||||||| ||| |||||||| | |||| |||||| ||||||||||||||   | ||||| |||||||||||| | ||| |||||||||||||    
T  16075097 tgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgca-tggcaaatgcatctgtgtg 16075195  T
Q  540 gtgccttagtggcggg 555  Q
    ||| ||||||||||||    
T  16075196 gtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  |  |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  165 aaatatgaattcatatggtaaaat 188  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  67 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||  |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  167 atat 170  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 43407182 - 43407104
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||| |||| | | ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  43407182 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 43407104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 491
Target Start/End: Original strand, 6836246 - 6836308
Alignment:
Q  429 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 491  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||    
T  6836246 tttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 6836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 557
Target Start/End: Original strand, 28561778 - 28561890
Alignment:
Q  446 agtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgca--tctgtgtggtgc 543  Q
    |||||| || ||| |||||||| | |||| |||  |||||||||||||||||| ||||||| ||||||||||||| |  |||||||  ||||||||||||    
T  28561778 agtggcaggttaatatcatatttctttgtggtgtttaagtggcgggatttaattttcattttcatgatcatgcatga-tatatgcatttctgtgtggtgc 28561876  T
Q  544 cttagtggcgggtt 557  Q
    ||||||||| ||||    
T  28561877 cttagtggcaggtt 28561890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 555
Target Start/End: Original strand, 338431 - 338577
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgtt 501  Q
    ||||||||||||||||||||||     |||||| ||||||||| | ||||||| ||  || |||||   | || |||||| ||||||||| |||| | |     
T  338431 ttgccttagtggcgggttaata-----tttcttagtggtgcctaactggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtttg 338524  T
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||||||||   ||||||||||||||||||||||||||||||||    
T  338525 cattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 338577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 9537206 - 9537128
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||| |||| | | ||||| |||||||||||||  |||||||||| ||||||||||||||||||||||    
T  9537206 gtgccttagtggcgggttttagtctacattttcatgatcatgcatg-gcatatgcatttgtgtggtgccttagtggcggg 9537128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 551
Target Start/End: Original strand, 25921874 - 25921953
Alignment:
Q  471 ttgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtgg 551  Q
    |||| ||||||||||| ||||||||  | | ||||| ||||||||| ||| | ||||||||||||||||||||||||||||    
T  25921874 ttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatga-catatgcatctgtgtggtgccttagtgg 25921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 8421953 - 8422030
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgg 554  Q
    |||||| || |||||| |||| | | ||||| |||||||||||||  |||||||||||| |||||||||||||||||||    
T  8421953 gtgccttagcggcgggttttagtctgcattttcatgatcatgcatg-gcatatgcatctatgtggtgccttagtggcgg 8422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 16075096 - 16075150
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    |||||||| |||||||||||||  ||||| ||||||||||||| |||||||||||    
T  16075096 ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 26317615 - 26317677
Alignment:
Q  481 taagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgc 543  Q
    |||||||||| ||||| | ||||||| ||||||||||||||||||||| |||| |||| ||||    
T  26317615 taagtggcggaatttagtcttcattttcatgatcatgcattagcatatacatcagtgttgtgc 26317677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 338059 - 338135
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 142  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  338059 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 555
Target Start/End: Complemental strand, 33007440 - 33007388
Alignment:
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  33007440 cattttcataatcatgcat-agcatatgcatctgtgtggtgctttagtggcggg 33007388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 43408007 - 43407930
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 142  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  43408007 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 43407930  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 623
Target Start/End: Complemental strand, 19198474 - 19198416
Alignment:
Q  564 tctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcat 623  Q
    |||||||||||||||||||||||| |||||||| || || |||| | |||||||||||||    
T  19198474 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt-tataagagcatgcat 19198416  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 6836401 - 6836449
Alignment:
Q  510 tgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttat 559  Q
    |||||||||||  |||||||||||||||||||||||  ||||||||||||    
T  6836401 tgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgggttat 6836449  T

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Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 8421574 - 8421615
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactagg 107  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 387 - 641
Target Start/End: Original strand, 49499403 - 49499655
Alignment:
Q  387 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 486  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  49499403 tatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtg 49499502  T
Q  487 gcgggatttaatgttcatt-tccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcg 585  Q
    || ||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||   |||||||||||||||||||||||||||    
T  49499503 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg---ttatttctgtgtggtgcctgtgtggcg 49499599  T
Q  586 ggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    || |||||||  || |||||| ||||||||||||||||||| ||||| ||||||||    
T  49499600 ggttatatccagatcatgtagaatttaagagcatgcattttacacataattgcatt 49499655  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 28969431 - 28969233
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 265  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacatt 28969234  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 99 - 342
Target Start/End: Original strand, 49499045 - 49499297
Alignment:
Q  99 agtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 198  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  199 ataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctatt--------catatatg-tttttgt 289  Q
    |||||| ||||||||||||||||||||||||| |||| || || |  |||||| || ||||||||||| || ||||        |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  290 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 342  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 440 - 641
Target Start/End: Complemental strand, 2761911 - 2761714
Alignment:
Q  440 tgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtg 539  Q
    ||||||||||| ||| | | ||||||||   |||| |||| ||||||| ||||||||   ||||||| |||||||||||||  |||||||||| ||||||    
T  2761911 tgccttagtggtgggttgatatcatattattttgtggtgcttaagtggtgggatttaggattcattttcatgatcatgcatg-gcatatgcatttgtgtg 2761813  T
Q  540 gtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgca 639  Q
    |||||||||||| ||||||||    |||||||||||||  |||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||    
T  2761812 gtgccttagtggagggttattc---ctgtgtggtgccttagtggcgggttatatccgaatcatttagtatttaagagcatgcattttacacatgattgca 2761716  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 40459471 - 40459552
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  40459471 tatttctgtgtggtgtctgtgtggcgggttatatccggatcatgtagtatctaagagcatgcattttacacatcattgcatt 40459552  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 418
Target Start/End: Original strand, 49499313 - 49499398
Alignment:
Q  333 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctaactgtatttgtctatgagtttgccttagtggcgggt 418  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||| ||| ||||  |||||| |||||||||||||||||    
T  49499313 atgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttagtggcgggt 49499398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 426 - 555
Target Start/End: Original strand, 40459293 - 40459420
Alignment:
Q  426 atatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagca 525  Q
    ||||||||| ||||||||| ||||||||| ||  || |||||  || ||||||||| ||||||||| ||||   | ||||| |||||||||||||   ||    
T  40459293 atatttcttagtggtgcctaagtggcgggttataattatattctat-gttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgt-ca 40459390  T
Q  526 tatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||||||||||||||||||||||||||||    
T  40459391 tatgcatctgtgtggtgccttagtggcggg 40459420  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 491
Target Start/End: Original strand, 69628 - 69690
Alignment:
Q  429 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 491  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||    
T  69628 tttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 69690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 623
Target Start/End: Original strand, 55162712 - 55162774
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcat 623  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||| | |||||||||||||    
T  55162712 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagt-tataagagcatgcat 55162774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 69712 - 69780
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 472  Q
    ||||||||||||||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  69712 tgccttagtggcgggttacgattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 69780  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 55162571 - 55162623
Alignment:
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  55162571 cattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 55162623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 28969059 - 28968976
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcat----tagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| |||||  || |||||| | ||||| |||||||||||||    | |||||||||||||||||||||||||||||||||    
T  28969059 gtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcggg 28968976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 28968925 - 28968845
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||| ||||||||||| |||||||| || || |||| | ||||||||||||| |||  ||| ||||||||    
T  28968925 tatttctgtgtggtgcatgtgtggcgggttatatccggatcatatagt-tataagagcatgcatcttgtgcataattgcatt 28968845  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 42899960 - 42899892
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtg 574  Q
    |||| ||| |||||||||||  ||||||||||||||||||| ||| ||||||   |||||||||||||||||    
T  42899960 attttcataatcatgcattaatatatgcatctgtgtggtgctttaatggcgg---attatttctgtgtggtg 42899892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 559
Target Start/End: Original strand, 69782 - 69837
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttat 559  Q
    |||| |||||||||||||  |||||||||||||||||||||||  ||||||||||||    
T  69782 attttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgggttat 69837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 40458905 - 40458992
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 153  Q
    |||||||||||||||||||||||||| | |||||||| ||| || | |||||| || || ||||||  |||||||||| || |||||||    
T  40458905 gaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 623
Target Start/End: Original strand, 69810 - 69868
Alignment:
Q  564 tctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcat 623  Q
    |||||||||||||||||||||||| |||||||| || || |||| | |||||||||||||    
T  69810 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt-tataagagcatgcat 69868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 553
Target Start/End: Original strand, 13652928 - 13653002
Alignment:
Q  479 cctaagtggcgggatttaatgtt-catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcg 553  Q
    ||||||||||||| |||| | || ||||| |||||||||||||  | |||||||| ||||||||||||||||||||    
T  13652928 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 553
Target Start/End: Original strand, 13661053 - 13661127
Alignment:
Q  479 cctaagtggcgggatttaatgtt-catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcg 553  Q
    ||||||||||||| |||| | || ||||| |||||||||||||  | |||||||| ||||||||||||||||||||    
T  13661053 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 587
Target Start/End: Original strand, 69703 - 69762
Alignment:
Q  532 tctgtgtggtgccttagtggcgggtt---attat-ttctgtgtggtgcctgtgtggcggg 587  Q
    ||||||||||||||||||||||||||   ||||| |||||||||||||||  ||||||||    
T  69703 tctgtgtggtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcggg 69762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 8e-69; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 217  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 439 - 641
Target Start/End: Complemental strand, 12774244 - 12774044
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    |||||||||||||||||||| |||||||  | |||| ||||||||||||||||||| |   ||||||| |||||||||||||  ||||||||||||||||    
T  12774244 gtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgcatc-gcatatgcatctgtgt 12774146  T
Q  539 ggtgcctta--gtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcatt 636  Q
    |||||||||  ||||||||||||| ||   ||||||||| ||||||||||| |||||| | || |||||||||||||||||||||||||| ||||| ||     
T  12774145 ggtgccttatagtggcgggttattttt---gtgtggtgcatgtgtggcgggttatatctggatcatgtagtatttaagagcatgcattttacacataatc 12774049  T
Q  637 gcatt 641  Q
    |||||    
T  12774048 gcatt 12774044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 555
Target Start/End: Complemental strand, 18292582 - 18292431
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgtt 501  Q
    |||||||||||| ||||||||| ||||| ||| || ||||||||||||||||| ||  || |||||   | || |||||| ||||||||| |||| | |     
T  18292582 ttgccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtctg 18292484  T
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  18292483 cattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 18292431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 439 - 555
Target Start/End: Complemental strand, 28266964 - 28266848
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    ||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||| | |||||||  ||||||||||| | |||||||||||| |||    
T  28266964 gtgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggcgggatttagtcttcattttaatgatcatgca-tggcatatgcatctatgt 28266866  T
Q  539 gg-tgccttagtggcggg 555  Q
    || || ||||||||||||    
T  28266865 ggatgtcttagtggcggg 28266848  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 40448001 - 40448082
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||||||||||| ||||||||||||||    
T  40448001 tatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtacctaagagcatgcattttacacatcattgcatt 40448082  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 435 - 521
Target Start/End: Original strand, 29270993 - 29271079
Alignment:
Q  435 tgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcatt 521  Q
    |||||||||||||||| ||| ||| |||||||||| |||  ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  29270993 tgtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcatt 29271079  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 1193590 - 1193765
Alignment:
Q  57 aagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaa 156  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  |  |||||  |||||||||| |||||||||| ||    
T  1193590 aagcgttcgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaa 1193688  T
Q  157 aacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 233  Q
    ||||| ||||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193689 aacaattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  166 aatat 170  Q
    |||||    
T  12774958 aatat 12774954  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 28267804 - 28267692
Alignment:
Q  55 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 154  Q
    |||||||| | ||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||| ||| |||||||||      
T  28267804 taaagcgtataaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga-- 28267708  T
Q  155 aaaacaactaaaatat 170  Q
    ||||||||||||||||    
T  28267707 aaaacaactaaaatat 28267692  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 641
Target Start/End: Complemental strand, 35670501 - 35670395
Alignment:
Q  532 tctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcaca 631  Q
    ||||||||||| ||  |||||||||||||   | |||||| ||||||||||||| | |||||  | || |||||||||||||||||||||||||| ||||    
T  35670501 tctgtgtggtgtctgtgtggcgggttatt---tatgtgtgatgcctgtgtggcgagttatatttggatcatgtagtatttaagagcatgcattttacaca 35670405  T
Q  632 tcattgcatt 641  Q
    | ||||||||    
T  35670404 taattgcatt 35670395  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 641
Target Start/End: Complemental strand, 36731911 - 36731836
Alignment:
Q  566 tgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||| |||||||||| |||| |||||| | || |||||||||||||||||||||||||| |||| |||||||||    
T  36731911 tgtgtgctgcctgtgtgacgggttatatctggatcatgtagtatttaagagcatgcattttacacagcattgcatt 36731836  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 555
Target Start/End: Original strand, 40447804 - 40447950
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgtt 501  Q
    ||||||||||||||||||||||     |||||| ||||||||| | ||||||| ||  || |||||   | || |||||| ||||||||| |||| | |     
T  40447804 ttgccttagtggcgggttaata-----tttcttagtggtgcctaactggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtttg 40447897  T
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||||||||   ||||||||||||||||||||||||||||||||    
T  40447898 cattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 40447950  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Complemental strand, 40729242 - 40729168
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtgg 551  Q
    |||||| ||||||||| |||| | | ||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  40729242 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtgg 40729168  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 41340068 - 41339990
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    |||||| ||||||||| |||| | ||||||| ||||| |||||||  ||||||||| |||||||||||||||||||||||    
T  41340068 gtgccttagtggcgggttttagtcttcattttcatgaccatgcatg-gcatatgcacctgtgtggtgccttagtggcggg 41339990  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  133 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 225  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 41339908 - 41339856
Alignment:
Q  589 tatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  41339908 tatatccggatcatgtagtatctaagagcatgcattttacacatcattgcatt 41339856  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 542
Target Start/End: Complemental strand, 35670604 - 35670502
Alignment:
Q  439 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgt 538  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||| ||||||||||| |   | ||||| ||||||||||||| |||||||||||||||||    
T  35670604 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgt 35670506  T
Q  539 ggtg 542  Q
    ||||    
T  35670505 ggtg 35670502  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 23828392 - 23828298
Alignment:
Q  47 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    |||||| ||||||||| | ||||||||  ||||| |||| |||||||||||||||  ||||| | ||||||||| ||  |||||| |||||||||    
T  23828392 ctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 12774243 - 12774190
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    ||||||||||||||| |||||  |||| |||||||||||||| |||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggat 12774190  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 40447432 - 40447508
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 142  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  40447432 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 44788932 - 44789000
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 472  Q
    ||||||||||| ||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  44788932 tgccttagtggagggttacaattatatt-ctgtgtggtgccttagtggcgggctaatatcatattgcatt 44789000  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 44788866 - 44788910
Alignment:
Q  447 gtggcgggataacatcatattgcattgttgtgcctaagtggcggg 491  Q
    ||||||||  || ||||||||||||||||||||||||||||||||    
T  44788866 gtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 44788910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 36732043 - 36731989
Alignment:
Q  402 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    ||||||||| ||||||||||||  ||||||||| ||| ||||| |||||||||||    
T  36732043 ttgccttaggggcgggttaatatcatatttcttagtgatgcctaagtggcgggat 36731989  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 34397632 - 34397559
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggc 552  Q
    |||||| ||||||||| |||| | | ||||  |||||||||||||  | ||||||||||||||||||||||||||||    
T  34397632 gtgccttagtggcgggttttagtctgcatt--catgatcatgcatg-gtatatgcatctgtgtggtgccttagtggc 34397559  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 35670603 - 35670550
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 456  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  35670603 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 35670550  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 641
Target Start/End: Complemental strand, 40729113 - 40729033
Alignment:
Q  560 tatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    ||||||||||||||| ||||||||| || |||||||| || || |||| | ||||||||||||| || | ||| ||||||||    
T  40729113 tatttctgtgtggtgtctgtgtggcaggttatatccggatcatatagt-tataagagcatgcatcttacgcataattgcatt 40729033  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 641
Target Start/End: Original strand, 44789030 - 44789106
Alignment:
Q  564 tctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    |||||||||||||||||||||||| |||||||| || || |||| | || |||||||||| || | ||| ||||||||    
T  44789030 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagt-tatacgagcatgcatcttacgcataattgcatt 44789106  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 44789021 - 44789057
Alignment:
Q  523 gcatatgcatctgtgtggtgccttagtggcgggttat 559  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44789021 gcatatgcatctgtgtggtgcctgtgtggcgggttat 44789057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 447 - 641
Target Start/End: Complemental strand, 40841322 - 40841131
Alignment:
Q  447 gtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgcctt 546  Q
    ||||||||  || ||||||||||||||||||||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||     
T  40841322 gtggcgggtaaatatcatattgcattgttgtgcctatgttgcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctg 40841223  T
Q  547 agtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
     |||||||    |||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||| ||||| || |||||    
T  40841222 tgtggcgg---cttatttctatgtggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatacattttacacataatcgcatt 40841131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 587
Target Start/End: Original strand, 44436442 - 44436620
Alignment:
Q  403 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatgttc 502  Q
    ||||||||| ||||||||  | |||||| || |||||||||||||| ||||| ||  || ||||| |  ||| |||||| ||||| ||| |||| | |      
T  44436442 tgccttagttgcgggttataattatatt-ctgtgtggtgccttagttgcgggttataattatatt-ctgtgtggtgccttagtggtgggttttagtctct 44436539  T
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcggg 587  Q
    |||| ||||||||||| || |||||||||||||||||||||||  |||||||| ||||   ||||||||||||||||||||||||    
T  44436540 attttcatgatcatgc-ttggcatatgcatctgtgtggtgcctgtgtggcgggatatt---tctgtgtggtgcctgtgtggcggg 44436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 503 - 641
Target Start/End: Complemental strand, 22816064 - 22815931
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattat 602  Q
    |||| |||||||||||||  ||||||||||||||| |||||||  || ||||||||||   |||||||||||| ||||||||||| |||||| | || ||    
T  22816064 attttcatgatcatgcatg-gcatatgcatctgtgcggtgcctgtgtagcgggttatt---tctgtgtggtgcttgtgtggcgggttatatctggatcat 22815969  T
Q  603 gtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
     |||| | ||||||||||||| || ||||| ||||||||    
T  22815968 atagt-tataagagcatgcatcttacacataattgcatt 22815931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  65 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||  ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  165 aaatat 170  Q
    ||||||    
T  22816492 aaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 35840649 - 35840710
Alignment:
Q  427 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc 488  Q
    ||||||| ||| ||||||| ||||||||  || |||||||||||||||||||||||||||||    
T  35840649 tatttctgtgtcgtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggc 35840710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 555
Target Start/End: Complemental strand, 41958211 - 41958159
Alignment:
Q  502 catttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcggg 555  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  41958211 cattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 41958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 586
Target Start/End: Complemental strand, 22635774 - 22635692
Alignment:
Q  500 ttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgg 586  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||  |||||| |   |||||||||| |||||| ||||||||||    
T  22635774 ttcattttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgag---ttatttctgtatggtgcatgtgtggcgg 22635692  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  133 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 232  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  233 t 233  Q
    |    
T  35839268 t 35839268  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  64 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  64 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  68 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 153  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

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Target: scaffold1838 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 221 - 374
Alignment:
Q  111 atgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 210  Q
    ||||||||||||| || ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  211 agtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 266  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccattt 374  T

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Target: scaffold0041 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 476 - 641
Target Start/End: Complemental strand, 33100 - 32937
Alignment:
Q  476 gtgcctaagtggcgggatttaatgttcatttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattat----ttctgtgtg 571  Q
    ||||||||||||||||||||| | ||||||      ||||||||| | ||||||||||||||||||||||  ||| ||||| || ||    |||||||||    
T  33100 gtgcctaagtggcgggatttagttttcatt------atcatgcatga-catatgcatctgtgtggtgcctgtgtgacgggtcataattatattctgtgtg 33008  T
Q  572 g-tgcctgtgtggcgggatatatccgaattatgtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
    | ||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  33007 gatgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcatt 32937  T

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Target: scaffold0013 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 503 - 641
Target Start/End: Complemental strand, 242783 - 242650
Alignment:
Q  503 atttccatgatcatgcattagcatatgcatctgtgtggtgccttagtggcgggttattatttctgtgtggtgcctgtgtggcgggatatatccgaattat 602  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||  |||||||||||||   |||||||||||||||||||||||| |||||||  || ||    
T  242783 attttcatgatcttgcat-agcatatgcatatgtgtggtgcctgtgtggcgggttatt---tctgtgtggtgcctgtgtggcgggttatatccagatcat 242688  T
Q  603 gtagtatttaagagcatgcattttgcacatcattgcatt 641  Q
     |||| | ||||||||||||| || | ||| ||||||||    
T  242687 atagt-tataagagcatgcatcttacgcataattgcatt 242650  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 488
Target Start/End: Complemental strand, 242936 - 242883
Alignment:
Q  435 tgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc 488  Q
    ||||||||||| ||| ||||  || |||||||||||||||||||||| ||||||    
T  242936 tgtggtgcctttgtgacgggtaaatatcatattgcattgttgtgccttagtggc 242883  T

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Target: scaffold0120 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  66 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 356971 - 356884
Alignment:
Q  54 gtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 141  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||  |||||| |||||||||    
T  356971 gtaaagcgtctaaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

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