View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18294_low_12 (Length: 249)

Name: NF18294_low_12
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18294_low_12
NF18294_low_12
[»] chr7 (16 HSPs)
chr7 (17-249)||(10288132-10288366)
chr7 (17-249)||(11035724-11035958)
chr7 (27-249)||(15873328-15873550)
chr7 (17-249)||(22078258-22078493)
chr7 (34-249)||(9993953-9994170)
chr7 (17-192)||(12911072-12911249)
chr7 (17-223)||(40106463-40106677)
chr7 (17-223)||(48653169-48653377)
chr7 (50-191)||(18366701-18366844)
chr7 (17-192)||(12196095-12196273)
chr7 (17-181)||(49169680-49169846)
chr7 (19-191)||(21490833-21491010)
chr7 (27-181)||(13163625-13163780)
chr7 (89-180)||(24056671-24056763)
chr7 (69-175)||(9554537-9554644)
chr7 (96-192)||(3692025-3692124)
[»] chr6 (11 HSPs)
chr6 (27-249)||(34636818-34637041)
chr6 (17-249)||(32449607-32449841)
chr6 (50-249)||(23260026-23260226)
chr6 (17-190)||(10750970-10751145)
chr6 (19-222)||(20559456-20559656)
chr6 (27-249)||(13772761-13772989)
chr6 (17-181)||(26182034-26182199)
chr6 (50-249)||(24164417-24164623)
chr6 (68-175)||(11166045-11166153)
chr6 (85-177)||(31275943-31276036)
chr6 (135-175)||(31276852-31276892)
[»] chr5 (8 HSPs)
chr5 (27-249)||(537451-537674)
chr5 (17-249)||(42862001-42862239)
chr5 (17-192)||(38001668-38001844)
chr5 (17-192)||(40691563-40691741)
chr5 (27-192)||(30910447-30910613)
chr5 (17-180)||(6309396-6309561)
chr5 (81-175)||(23211155-23211249)
chr5 (34-82)||(28201902-28201950)
[»] chr4 (8 HSPs)
chr4 (17-249)||(40459582-40459816)
chr4 (27-181)||(55162891-55163046)
chr4 (34-249)||(2761451-2761671)
chr4 (17-192)||(28968579-28968757)
chr4 (17-192)||(69990-70165)
chr4 (17-180)||(49499757-49499922)
chr4 (68-184)||(10276745-10276862)
chr4 (92-177)||(41869372-41869458)
[»] chr1 (15 HSPs)
chr1 (17-249)||(43406708-43406942)
chr1 (17-249)||(338739-338973)
chr1 (17-249)||(37666521-37666753)
chr1 (17-241)||(6836534-6836760)
chr1 (17-249)||(18472283-18472521)
chr1 (27-181)||(8422256-8422411)
chr1 (17-249)||(35761371-35761610)
chr1 (68-192)||(33007044-33007170)
chr1 (68-179)||(24276088-24276199)
chr1 (68-192)||(19198193-19198321)
chr1 (68-175)||(24055660-24055767)
chr1 (69-168)||(33009104-33009204)
chr1 (60-180)||(16075403-16075525)
chr1 (68-175)||(16111072-16111184)
chr1 (99-192)||(9536769-9536864)
[»] chr3 (13 HSPs)
chr3 (17-249)||(16975949-16976183)
chr3 (17-249)||(46403941-46404176)
chr3 (17-249)||(7336033-7336269)
chr3 (17-249)||(5004070-5004306)
chr3 (17-249)||(9104729-9104963)
chr3 (17-180)||(43277383-43277548)
chr3 (19-191)||(11937233-11937403)
chr3 (50-180)||(8731443-8731575)
chr3 (50-180)||(9083330-9083462)
chr3 (68-175)||(5704621-5704729)
chr3 (68-175)||(1461464-1461571)
chr3 (84-192)||(17542113-17542223)
chr3 (68-175)||(16972610-16972718)
[»] chr2 (12 HSPs)
chr2 (17-249)||(40448112-40448346)
chr2 (17-249)||(35670108-35670347)
chr2 (17-249)||(41339594-41339831)
chr2 (17-192)||(40728771-40728947)
chr2 (47-249)||(12773805-12774014)
chr2 (17-192)||(18292084-18292262)
chr2 (18-184)||(34397197-34397365)
chr2 (68-223)||(28266544-28266705)
chr2 (17-192)||(44789194-44789370)
chr2 (68-184)||(23827782-23827899)
chr2 (50-180)||(29271283-29271415)
chr2 (68-175)||(11387647-11387755)
[»] scaffold0413 (1 HSPs)
scaffold0413 (17-249)||(61-297)
[»] scaffold0657 (1 HSPs)
scaffold0657 (27-194)||(1690-1858)
[»] chr8 (8 HSPs)
chr8 (76-244)||(35840786-35840955)
chr8 (27-192)||(41957811-41957975)
chr8 (17-249)||(40840866-40841101)
chr8 (17-180)||(6150220-6150385)
chr8 (17-192)||(44436790-44436967)
chr8 (75-175)||(12659338-12659439)
chr8 (17-125)||(22815674-22815783)
chr8 (68-175)||(10250945-10251053)
[»] scaffold0041 (1 HSPs)
scaffold0041 (27-240)||(32699-32911)
[»] scaffold1838 (1 HSPs)
scaffold1838 (27-223)||(840-1041)
[»] scaffold0120 (1 HSPs)
scaffold0120 (68-175)||(2115-2223)
[»] scaffold0002 (1 HSPs)
scaffold0002 (69-184)||(356356-356472)
[»] scaffold0069 (1 HSPs)
scaffold0069 (69-175)||(11403-11510)
[»] scaffold0013 (1 HSPs)
scaffold0013 (60-180)||(242430-242552)
[»] scaffold0006 (1 HSPs)
scaffold0006 (69-175)||(89863-89970)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 10288132 - 10288366
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  10288132 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 10288231  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  10288232 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 10288331  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  10288332 tttcttttgtatatataacagtttaatcacttatc 10288366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 11035724 - 11035958
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  11035724 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 11035823  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  11035824 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttgaggtaaagttcatacaca 11035923  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||| ||||||||||||    
T  11035924 tttcttttgtatatataacagtataatcacttatc 11035958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 15873328 - 15873550
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15873328 aaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactcaaagcacaagaac 15873427  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtg 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||     
T  15873428 aatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtc-ttaaggtaaagttcatacacatttcttttgta 15873526  T
Q  226 tatataacagtttaatcacttatc 249  Q
    ||||||||||||||||||||||||    
T  15873527 tatataacagtttaatcacttatc 15873550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 22078493 - 22078258
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcat-accca 114  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  22078493 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcataactca 22078394  T
Q  115 aagcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacac 213  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  22078393 aagtacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcagaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacac 22078294  T
Q  214 atttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||||| |||||||  |||||||||||||||    
T  22078293 atttcttttgtatatataaatgtttaatcacttatc 22078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 9994170 - 9993953
Alignment:
Q  34 caaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtc-aatttccttatccaaattggttcatacccaaagcacaagaacaatgcc 132  Q
    ||||||||| | ||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9994170 caaagcatacaccatgtcttctttgatacctaaaatgttagtgttaggggccaatttccttatccaaattggttcatactcaaagcacaagaacaatgcc 9994071  T
Q  133 acaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtgtatata 231  Q
    ||||||||||||||| |||||||||||||| ||||  ||| ||| ||||||||  |||||||||||||||||||||| ||||||||||||||| ||||||    
T  9994070 acaaaatagatagtatcaaaacttctcaataaaaagaaaaaaagaaaaatacacataagtctttaaggtaaagttcatacacatttcttttgtttatata 9993971  T
Q  232 acagtttaatcacttatc 249  Q
     || ||||||||||||||    
T  9993970 ccaatttaatcacttatc 9993953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 12911072 - 12911249
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  12911072 cacttcaagcaaaaacttcaaagcatagaccatatctgctttggtacctaaaatattagtgtaagggtcaattttcttatccaaattggttcatactcaa 12911171  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    |||||||| ||||||| || ||||||||||||| |||||||||||||||||||||   |||||||||||||| |||||    
T  12911172 agcacaagaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaaggtttaagaaaatacattcaagtc 12911249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 40106677 - 40106463
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||||||||||  |||||||||| | |||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||    
T  40106677 cacttcaagcaaaaacttcaaagcatagacaatctcttcttaggtacctaaaattttaatgtaagggtcaatttccatatccaaattggttcatactcaa 40106578  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaa------gtctttaaggtaaagttc 207  Q
    |||||||| ||||||| || ||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||      |||||||| |||||||||    
T  40106577 agcacaagaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagatataagaaaaatacattcaagtcattgtctttaa-gtaaagttc 40106479  T
Q  208 acacacatttcttttg 223  Q
    ||||||||||| ||||    
T  40106478 acacacatttcatttg 40106463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 48653169 - 48653377
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  48653169 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattaatgtaagggtcaatttccttatccaaattggttcatactcaa 48653268  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc------tttaaggtaaagttca 208  Q
    |||||||| |||||||      |||||||| || ||||||||||||||||||||||  |||||||||||||| |||||      ||| | ||||||||||    
T  48653269 agcacaagaaacaatg------aatagataatatcaaaacttctcaatcaaaaagatttaagaaaatacattcaagtcatatgtttttaagtaaagttca 48653362  T
Q  209 cacacatttcttttg 223  Q
     ||||||||||||||    
T  48653363 tacacatttcttttg 48653377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 18366701 - 18366844
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaa 148  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||     
T  18366701 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaaacaatgtcataaaatagatagtat 18366800  T
Q  149 caaaacttctcaatcaaaaagaaataa-gaaaatacatttaagt 191  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||    
T  18366801 caaaacttctcaattaaaaagaaataaggaaaatacattcaagt 18366844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 12196095 - 12196273
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||    
T  12196095 cacttcaagcaaaaacttcaaagtatagaccatctcttctttggtacctaaaatgttagtgtaagagtcaatttccttatccaaattggttcatactcaa 12196194  T
Q  116 agca-caagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    |||| ||  ||||||| ||  ||||||||| || |||||||| |||||||||||||| |||| |||||||||| |||||    
T  12196195 agcaccataaacaatgtcatgaaatagataatagcaaaacttatcaatcaaaaagaattaagaaaaatacattcaagtc 12196273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 49169680 - 49169846
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||| |||||| ||||||||||||| |||||||||| ||| |||| |||||||||| ||||||||||||||||||||| |||    
T  49169680 cacttcaagcaaaaacttcaaatcatagaacatctcttctttggtacctaaaatgttaatgtaggggtcaattttcttatccaaattggttcatactcaa 49169779  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaat 181  Q
    ||||| || ||||||| || |||||||||| || |||||||| |||||||||||||| |||||||||    
T  49169780 agcaccagaaacaatgtcataaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaat 49169846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 21490833 - 21491010
Alignment:
Q  19 cttcaagcaaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagc 118  Q
    |||||||||||||  ||||||||| | ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21490833 cttcaagcaaaacaccaaagcataca-catgtcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagc 21490931  T
Q  119 acaagaa-caatgccacaaaatagatagtaa----caaaacttctcaatcaaaaagaaataa-gaaaatacatttaagt 191  Q
    ||||||| ||||| || |||||||||||||     |||||||||||||| |||||||||||| ||||||||||| ||||    
T  21490932 acaagaaacaatgtcataaaatagatagtatatatcaaaacttctcaattaaaaagaaataaggaaaatacattcaagt 21491010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 13163625 - 13163780
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aa 125  Q
    |||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||    
T  13163625 aaaacttcaaagcatagaccatctattctttggtatctaaaatattagtgtaagggtcaatttccttaaccaaattggttcatactcaaagcaccagaaa 13163724  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaat 181  Q
    ||||| || ||| |||||| || |||||||| ||||| |||||||| |||||||||    
T  13163725 caatgtcataaattagataatatcaaaacttatcaataaaaaagaattaagaaaat 13163780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 24056671 - 24056763
Alignment:
Q  89 tccttatccaaattggttcatacccaaagcacaagaa-caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa 180  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||| || |||||||||| || ||||||||||||||||||||||||||||||||    
T  24056671 tccttatccaaattgattcatactcaaagcactagaaacaatgtcataaaatagataatatcaaaacttctcaatcaaaaagaaataagaaaa 24056763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 9554537 - 9554644
Alignment:
Q  69 tattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    ||||| ||||||||||||||| |||||| ||| |||||||||| ||||||||||| |||||||  | ||| ||||||||| |||||||||| ||||||||    
T  9554537 tattaatgtaagggtcaattttcttatctaaactggttcatactcaaagcacaagaaacaatgttataaagtagatagtatcaaaacttcttaatcaaaa 9554636  T
Q  168 agaaataa 175  Q
    ||||||||    
T  9554637 agaaataa 9554644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 3692124 - 3692025
Alignment:
Q  96 ccaaattggttcatacccaaagcacaagaacaa--tgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    |||||||||||||||| ||||||||||||| ||  | | | ||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  3692124 ccaaattggttcatactcaaagcacaagaaaaaattccaaaaaaatagatggtatcaaaacttctcaatcaaaaagaaataagaaaaatacattcaagtc 3692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 34637041 - 34636818
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34637041 aaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 34636942  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtg 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||     
T  34636941 aatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaagataaagttcatacacatttcttttgta 34636842  T
Q  226 tatataacagtttaatcacttatc 249  Q
    ||||||||||||||||||||||||    
T  34636841 tatataacagtttaatcacttatc 34636818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 32449607 - 32449841
Alignment:
Q  17 cacttcaagcaa-aacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  32449607 cacttcaagcaagaacttcaatgcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 32449706  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  32449707 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 32449806  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  32449807 tttcttttgtatatataacagtttaatcacttatc 32449841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 23260026 - 23260226
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaac 149  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  23260026 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaacaatgccacaaaatagatagtatc 23260125  T
Q  150 aaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtgtatataacagtttaatcacttat 248  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  23260126 aaaacttctcaataaaaaagaaataagaaaaatacatttaagtatttaaggtaaagttcatacacatttcttttgtatatataacagtttaatcacttat 23260225  T
Q  249 c 249  Q
    |    
T  23260226 c 23260226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 10750970 - 10751145
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  10750970 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 10751069  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaag 190  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  10751070 agcacaagaacaatgccacataatagatagtatcaaaacttctcaataaaaaagaaataagaaaaatacatttaag 10751145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 20559656 - 20559456
Alignment:
Q  19 cttcaagcaaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagc 118  Q
    |||||||||||||  ||||||||| | ||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  20559656 cttcaagcaaaacaccaaagcatacaccatgtcttctttgatacctaaaatgttactgtaagggtcaatttctttatccaaattggttcatactcaaagc 20559557  T
Q  119 acaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtctttaaggtaaagttcacacacatttc 218  Q
    |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| || |||||||||    
T  20559556 acaagaacaatgcca-taaatagatactaccaaaacttctcaatcaaaaagaaataagaaaat--atttaagtctttaaggtaaagtgcatacacatttc 20559460  T
Q  219 tttt 222  Q
    ||||    
T  20559459 tttt 20559456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 13772761 - 13772989
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aa 125  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||    
T  13772761 aaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagagtcaatttccttatccaaattggttcatactcaaagcacaagaaa 13772860  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc------tttaaggtaaagttcacacacatttct 219  Q
    ||||| || || ||||||| || ||||||||||||||||||||||  |||||||||||||  |||||      ||| | |||||||||| ||||||||||    
T  13772861 caatgtcataatatagataatatcaaaacttctcaatcaaaaagatttaagaaaatacatacaagtcatatgtttttaagtaaagttcatacacatttct 13772960  T
Q  220 tttgtgtatataacagtttaatcacttatc 249  Q
    ||||  | ||||| ||||||||||||||||    
T  13772961 tttgcat-tataatagtttaatcacttatc 13772989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 26182034 - 26182199
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||    
T  26182034 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcaaaattggttcatactcaa 26182133  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaat 181  Q
    |||||  |||||||| ||  ||||||||| || |||||||| |||||||||||||| |||||||||    
T  26182134 agcaccggaacaatgtcatgaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaat 26182199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 24164623 - 24164417
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaaggg-tcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaa 148  Q
    |||| |||| |||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||     
T  24164623 tcttatttggtacctaaaatgttggtgtaaggggtcaatttccttatccaaattggttcatactcaaagcacaagaacaatgtcataaaatagatagtat 24164524  T
Q  149 caaaacttctcaatcaaaaagaaataag-aaaatacatttaagt------ctttaaggtaaagttcacacacatttcttttgtgtatataacagtttaat 241  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||      ||| ||||||||||| ||||||||||||||||  | ||||| ||||||||    
T  24164523 caaaacttctcaatcaagaaaaaataagaaaaatacattaaagtcatatgcttcaaggtaaagtttacacacatttcttttgcat-tataatagtttaat 24164425  T
Q  242 cacttatc 249  Q
    || |||||    
T  24164424 caattatc 24164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 11166045 - 11166153
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaa-gaacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||| |||||||||||||||||||  |||||||||  ||||||||   |||||||||||||  ||| |||||| ||||||    
T  11166045 atattaatgtaagggtcaatttccgtatccaaattggttcatactgaaagcacaataaacaatgctctaaaatagatagtataaaatcttctcgatcaaa 11166144  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  11166145 aagaaataa 11166153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 31275943 - 31276036
Alignment:
Q  85 aatttccttatccaaattggttcatacccaaagcacaagaac-aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataaga 177  Q
    |||||||||||||||||||||||||||  ||| ||| ||||  |||| || |||||||||| || ||||||||||| |||||||||||||||||    
T  31275943 aatttccttatccaaattggttcatacttaaaacacgagaaataatgtcataaaatagataatatcaaaacttctcgatcaaaaagaaataaga 31276036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 31276892 - 31276852
Alignment:
Q  135 aaaatagatagtaacaaaacttctcaatcaaaaagaaataa 175  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  31276892 aaaatagatagtatcaaaacttctcaataaaaaagaaataa 31276852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 537674 - 537451
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537674 aaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 537575  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtg 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||     
T  537574 aatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaagataaagttcatacacatttcttttgta 537475  T
Q  226 tatataacagtttaatcacttatc 249  Q
    ||||||||||||||||||||||||    
T  537474 tatataacagtttaatcacttatc 537451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 42862239 - 42862001
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||    
T  42862239 cacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatattagtgtaagggtcaattttcttatccaaattagtttatactcaa 42862140  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc------tttaaggtaaagttcac 209  Q
    ||||| | ||||||| || ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||      ||| | ||||||||||     
T  42862139 agcaccaaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagatttaagaaaatacatttaagtcatatgtttttaagtaaagttcat 42862040  T
Q  210 acacatttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||||||||  | ||||| ||||||||||||||||    
T  42862039 acacatttcttttgcat-tataatagtttaatcacttatc 42862001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 38001844 - 38001668
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||    
T  38001844 cacttcaagcaaaaacttcaaagcatagaccatctcttctttgatacctaaaatattagtgtaagagccaatttccttatccaaattggttcatacacaa 38001745  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    | ||| | ||||||| || ||||||||||||| ||||||||||||||||||||||  | | |||||||||| |||||    
T  38001744 aacaccaaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagattttaaaaaatacattcaagtc 38001668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 40691741 - 40691563
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  40691741 cacttcaagcaaaaactttaaagcatagaccatatcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 40691642  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    ||||| || ||||||  || |||||||||| ||  ||||||| |||||||||||||| |||| |||||||||| |||||    
T  40691641 agcaccagaaacaatatcataaaatagataatattaaaacttatcaatcaaaaagaattaagaaaaatacattcaagtc 40691563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 30910613 - 30910447
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagca-caagaa 125  Q
    |||||||||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||  ||    
T  30910613 aaaacttcaaagcataaaccatctcttctttcgtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactcaaaacaccataaa 30910514  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    ||||| || ||| |||||| || ||||||||||||||||||||||  || |||| |||||| |||||    
T  30910513 caatgtcataaagtagataatatcaaaacttctcaatcaaaaagatttatgaaattacattcaagtc 30910447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 6309561 - 6309396
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6309561 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 6309462  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa 180  Q
    ||||| || ||| ||| || | | |||||| || |||||||| |||||||| ||||| ||| ||||    
T  6309461 agcaccagaaactatgtcatatattagataatatcaaaacttatcaatcaacaagaattaataaaa 6309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 23211249 - 23211155
Alignment:
Q  81 ggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataa 175  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||| ||||| || ||||| ||||||    
T  23211249 ggtcaatttccttatccaaattggttcatactcaaagcacaataacaatgccacaaagtagatagtatcaaaatttctcgataaaaaataaataa 23211155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 28201950 - 28201902
Alignment:
Q  34 caaagcatagatcatctcttctttgatacctaaaatattagtgtaaggg 82  Q
    ||||| ||| |||||||||||||| |||| ||||||||| |||||||||    
T  28201950 caaagaatacatcatctcttctttaatacttaaaatattggtgtaaggg 28201902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 40459816 - 40459582
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  40459816 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactcaa 40459717  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  40459716 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 40459617  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  40459616 tttcttttgtatatataacagtttaatcacttatc 40459582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 55163046 - 55162891
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aa 125  Q
    |||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  55163046 aaaacttcaaagcatagaccatctcttctttggtgcctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagcaccagaaa 55162947  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaat 181  Q
    ||||| || |||||||||| || |||||||| |||||||||||||| |||||||||    
T  55162946 caatgtcataaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaat 55162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 2761451 - 2761671
Alignment:
Q  34 caaagcatagatcatctcttctttgatacctaaaatattagtgt--aagggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgc 131  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||   |||||    
T  2761451 caaagcatacaccatgtcttctttgatacctaaaatattagtgtgtaagggtcaatttccttatccaaattggttcatactcaaagcacaag---aatgc 2761547  T
Q  132 cacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagt------ctttaaggtaaagttcacacacatttcttttgt 224  Q
    || ||||||||||||| | |||||||||||||||||||||||||| |||||||||| || |      |||| | |||||||||| ||||||||||||||     
T  2761548 cataaaatagatagtatctaaacttctcaatcaaaaagaaataagaaaaatacattcaaatcatatgcttttaagtaaagttcatacacatttcttttgc 2761647  T
Q  225 gtatataacagtttaatcacttatc 249  Q
     |  |||| ||||||||||||||||    
T  2761648 at-cataatagtttaatcacttatc 2761671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 28968579 - 28968757
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  28968579 cacttcaagcaaaaacttcaaagcatagaccatcttttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttgatactcaa 28968678  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    |||||||| ||||||  || |||||||||| || ||||||||  |||| |||| ||| |||| |||||||||| |||||    
T  28968679 agcacaagaaacaatctcataaaatagataatatcaaaacttaccaataaaaacgaattaagaaaaatacattcaagtc 28968757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 70165 - 69990
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||| | |    
T  70165 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaaggatcaatttccttatccaaattggttcatactc-a 70067  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    ||||| || ||| ||| || |||||||||| || ||||||||||||||| ||||||  |||||||||||||| |||||    
T  70066 agcaccagaaactatgtcataaaatagataatatcaaaacttctcaatc-aaaagatttaagaaaatacattcaagtc 69990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 49499922 - 49499757
Alignment:
Q  17 cacttcaagc--aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcataccca 114  Q
    ||||||||||  |||||||||||||||||| ||||||||||||   ||||||||| |||||||||||||||||||||||||||||||| |||||||| |     
T  49499922 cacttcaagcgaaaaacttcaaagcatagaccatctcttctttagcacctaaaatgttagtgtaagggtcaatttccttatccaaattagttcatactc- 49499824  T
Q  115 aagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa 180  Q
    |||||| || ||||||| || |||||||||  || |||||||||||||| |||||||||||||||||    
T  49499823 aagcaccagaaacaatgtcataaaatagatcatatcaaaacttctcaattaaaaagaaataagaaaa 49499757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 10276862 - 10276745
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| ||||||    
T  10276862 atattaatgtaagggtcaatttccttatacaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaa 10276763  T
Q  167 aagaaataagaaaataca 184  Q
    ||||||||| || |||||    
T  10276762 aagaaataaaaatataca 10276745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 41869458 - 41869372
Alignment:
Q  92 ttatccaaattggttcatacccaaagcacaagaac-aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataaga 177  Q
    ||||||||||| |||||||| |||||||||||||  |||| ||| ||||||||| || |||||||||||||||||||||||||||||    
T  41869458 ttatccaaattagttcatactcaaagcacaagaaataatgtcacgaaatagataatatcaaaacttctcaatcaaaaagaaataaga 41869372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 43406708 - 43406942
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  43406708 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactcaa 43406807  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  43406808 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 43406907  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  43406908 tttcttttgtatatataacagtttaatcacttatc 43406942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 338973 - 338739
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  338973 cacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactcaa 338874  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  338873 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaacaagaaaaatacatttaagtctttaaggtaaagttcatacaca 338774  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  338773 tttcttttgtatatataacagtttaatcacttatc 338739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 37666521 - 37666753
Alignment:
Q  17 cacttcaagcaaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaa 116  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37666521 cacttcaagcaaaactacaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 37666620  T
Q  117 gcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacacat 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  37666621 gcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatc-aaaagaattaagaaaaatacatttaagtctttaaggtaaagttcatacacat 37666719  T
Q  216 ttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||| ||||||| ||||||||||||||||    
T  37666720 ttcttttgtatatataaaagtttaatcacttatc 37666753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 6836760 - 6836534
Alignment:
Q  17 cacttcaagcaaa-acttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    ||||||||||||| ||  ||||||||| | |||  |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||  ||    
T  6836760 cacttcaagcaaacacaccaaagcatacaccattccttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacttaa 6836661  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6836660 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 6836561  T
Q  215 tttcttttgtgtatataacagtttaat 241  Q
    |||||||||| ||||||||||||||||    
T  6836560 tttcttttgtatatataacagtttaat 6836534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 18472283 - 18472521
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  18472283 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatattagtgtaagggtcaattttcttatccaaattggttcatactcaa 18472382  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc------tttaaggtaaagttcac 209  Q
    ||||| | ||||||| || ||||||||||||| ||||||||||||||||||||||  | |||||||||||| |||||      ||| | ||||||||||     
T  18472383 agcaccaaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagattttagaaaatacattcaagtcatatgtttttaagtaaagttcat 18472482  T
Q  210 acacatttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||||||||  | ||||| ||||||||||||||||    
T  18472483 acacatttcttttg-ctttataatagtttaatcacttatc 18472521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 8422411 - 8422256
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aa 125  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  8422411 aaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagcaccagaaa 8422312  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaat 181  Q
    ||||| || |||||||||| || |||||||| |||||||||||||| |||||||||    
T  8422311 caatgtcataaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaat 8422256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 35761371 - 35761610
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||||||||||  || ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  35761371 cacttcaagcaaaaacttcaaagcatagacaatatcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 35761470  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagt------ctttaaggtaaagttca 208  Q
    |||||||| ||| |||||| |||||||||  || |||||||||| |||||||||||  ||| |||||||||| ||||      |||| | ||| ||||||    
T  35761471 agcacaagaaaccatgccataaaatagatgatatcaaaacttctgaatcaaaaagatttaaaaaaatacattcaagtcatatgcttttaagtagagttca 35761570  T
Q  209 cacacatttcttttgtgtatataacagtttaatcacttatc 249  Q
     ||||||||||||||  | ||||| ||||||||||||||||    
T  35761571 tacacatttcttttgcat-tataatagtttaatcacttatc 35761610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 33007044 - 33007170
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||| || |||||||||| || ||||||||||||||||||    
T  33007044 atattaatgtaagggtcaatttccttatccaaattgattcatactcaaagcaccagaaacaatgtcataaaatagataatatcaaaacttctcaatcaaa 33007143  T
Q  167 aagaaataagaaaa-tacatttaagtc 192  Q
    |||||||||||||| ||||||||||||    
T  33007144 aagaaataagaaaagtacatttaagtc 33007170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 24276199 - 24276088
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| | ||||||||||| |||||||    
T  24276199 atattaatgtaagggtcaatttctttatccaaattggttcatactcaaagtacaagaacaatgccacaaagtagatagcatcaaaacttctcgatcaaaa 24276100  T
Q  168 agaaataagaaa 179  Q
     |||||||||||    
T  24276099 ggaaataagaaa 24276088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 19198193 - 19198321
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag---aacaatgccacaaaatagatagtaacaaaacttctcaatca 164  Q
    |||||| || |||||||||||||||||||||||||||||||||| |||||||||||   ||||||| || ||||||||||||| |||||||||||||| |    
T  19198193 atattaatgcaagggtcaatttccttatccaaattggttcatactcaaagcacaagataaacaatgtcataaaatagatagtatcaaaacttctcaatta 19198292  T
Q  165 aaaagaaataag-aaaatacatttaagtc 192  Q
    ||||||| |||| ||||||||||||||||    
T  19198293 aaaagaattaagaaaaatacatttaagtc 19198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 24055660 - 24055767
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    |||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||  | ||||||||||| |||||||    
T  24055660 atattaatgtaggggtcaatttccttatccaaattggttgatactcaaagcacaagaacaatgccacaaagtagataacatcaaaacttctcgatcaaaa 24055759  T
Q  168 agaaataa 175  Q
     |||||||    
T  24055760 ggaaataa 24055767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 33009204 - 33009104
Alignment:
Q  69 tattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    ||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||| || ||| ||||||||| | ||||| ||| |||||||    
T  33009204 tattaatgtaagggtcaattttcttatccaaattggttcatgctcaaagcacaagaaacaatgtcataaagtagatagtatcgaaactactcgatcaaaa 33009105  T
Q  168 a 168  Q
    |    
T  33009104 a 33009104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 16075525 - 16075403
Alignment:
Q  60 tacctaaaatattagtgtaaggg-tcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttc 157  Q
    |||||||||| || |||||| || ||||||||||||||||| ||||||||||| ||||||| ||| |||||||  | |||||||||  || |||||||||    
T  16075525 tacctaaaatgttggtgtaaaggctcaatttccttatccaagttggttcatactcaaagcagaagaaacaatgttataaaatagatgatatcaaaacttc 16075426  T
Q  158 tcaatcaaaaagaaataagaaaa 180  Q
    | ||| |||||||| ||||||||    
T  16075425 ttaataaaaaagaattaagaaaa 16075403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 16111184 - 16111072
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-----aacaatgccacaaaatagatagtaacaaaacttctcaat 162  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||     ||||||| |  |||||||| ||||  ||||||| || ||    
T  16111184 atattaatgtaagggtcaattttcttatccaaattggttcatactcaaaggacaagaaataaacaatgtcttaaaatagacagtataaaaacttttcgat 16111085  T
Q  163 caaaaagaaataa 175  Q
    |||||||||||||    
T  16111084 caaaaagaaataa 16111072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 9536769 - 9536864
Alignment:
Q  99 aattggttcatacccaaagcacaagaa-caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    ||||||||||||| |||||||| |||| ||||| || |||||||||| || |||||||| |||||||||||||| |||| |||||||||| |||||    
T  9536769 aattggttcatactcaaagcactagaaacaatgtcataaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaaatacattcaagtc 9536864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 16976183 - 16975949
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  16976183 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 16976084  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16976083 aacacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 16975984  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||| |||||| ||||||||||||||||||||||||    
T  16975983 tttattttgtatatataacagtttaatcacttatc 16975949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 46403941 - 46404176
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  46403941 cacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 46404040  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtctttaaggtaaagttcacacacat 215  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46404041 agcacaagaacaatgccataaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaatacatttaagtctttaaggtaaagttcatacacat 46404140  T
Q  216 ttcttttgtgtatat--aacagtttaatcacttatc 249  Q
    ||| ||||| |||||  ||||||||||||| |||||    
T  46404141 ttcctttgtatatatacaacagtttaatcatttatc 46404176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 7336033 - 7336269
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  7336033 cacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 7336132  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  7336133 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 7336232  T
Q  215 tttcttttg--tgtatataacagtttaatcacttatc 249  Q
    |||| ||||  | |||||||||||||||||| |||||    
T  7336233 tttcctttgtatatatataacagtttaatcatttatc 7336269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 5004070 - 5004306
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  5004070 cacttcaagcaaaaacttcaaagcatagatcatctcttatttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 5004169  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5004170 agcacaagaacaataccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 5004269  T
Q  215 tttcttttgtgtat--ataacagtttaatcacttatc 249  Q
    |||| || || |||  ||||||||||||||| |||||    
T  5004270 tttccttggtatatacataacagtttaatcatttatc 5004306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 9104963 - 9104729
Alignment:
Q  17 cacttcaagca-aaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||    
T  9104963 cacttcaagcagaaacttcaaagcatagacaatctcttctttggtacctaaaatattagtgcaaggatcaatttccttatccaaattggttcatactcaa 9104864  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacac 213  Q
    |||||||| |||||||||| |||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  9104863 agcacaagaaacaatgccataaaataaatagtatcgaaacttctcaatcaaaaagaaataagaaaaatacatttaagt-tttaaggtaaagttcatacac 9104765  T
Q  214 atttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||| |||| ||||||||||||||||||||||||    
T  9104764 atttctgttgtatatataacagtttaatcacttatc 9104729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 43277383 - 43277548
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |  ||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43277383 cacttcaagcaaaaacaccaaagtatagaccatctcttctttagtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactcaa 43277482  T
Q  116 agca-caagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa 180  Q
    |||| ||  ||||||| || ||||||||||||| |||||||| ||||| ||||| || ||||||||    
T  43277483 agcaccataaacaatgtcataaaatagatagtatcaaaacttatcaataaaaaaaaattaagaaaa 43277548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 11937233 - 11937403
Alignment:
Q  19 cttcaagcaaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagc 118  Q
    |||||||||||||  ||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  11937233 cttcaagcaaaacaccaaagcataca-catgtcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatattcaaagc 11937331  T
Q  119 acaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataa-gaaaatacatttaagt 191  Q
    | ||| ||||||| || ||||   |||||| |||||||||||||| |||||||||||| ||||||||||| ||||    
T  11937332 ataagaaacaatgtcataaaa---atagtatcaaaacttctcaattaaaaagaaataaggaaaatacattcaagt 11937403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 8731575 - 8731443
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaaggg-tcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagta 147  Q
    ||||||||  |||||||||| ||  |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  8731575 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgccataaaatagatagta 8731476  T
Q  148 acaaaacttctcaatcaaaaagaaataagaaaa 180  Q
     ||| |||| |||||||||||||||| ||||||    
T  8731475 tcaagacttatcaatcaaaaagaaattagaaaa 8731443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 9083462 - 9083330
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaaggg-tcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagta 147  Q
    ||||||||  |||||||||| ||  |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  9083462 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgccataaaatagatagta 9083363  T
Q  148 acaaaacttctcaatcaaaaagaaataagaaaa 180  Q
     ||| |||| |||||||||||||||| ||||||    
T  9083362 tcaagacttatcaatcaaaaagaaattagaaaa 9083330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 5704729 - 5704621
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| ||||||    
T  5704729 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaa 5704630  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  5704629 aagaaataa 5704621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 1461571 - 1461464
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||  |||||||||| ||| ||||| |||| || |||    
T  1461571 atattaatgtaagagtcaatttccttatccaaattagttcatactcaaagcacaagaaacaatgccctaaaatagataataa-aaaacctctcgattaaa 1461473  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  1461472 aagaaataa 1461464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 17542113 - 17542223
Alignment:
Q  84 caatttccttatccaaattggttcatacccaaagca-caagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaat 181  Q
    ||||||||||||||||||| |||||||| ||||||| ||  ||||||| || |||||||||| || ||||||||  ||||||||||||| |||| |||||    
T  17542113 caatttccttatccaaattagttcatactcaaagcaccataaacaatgtcataaaatagataatatcaaaacttaccaatcaaaaagaattaagaaaaat 17542212  T
Q  182 acatttaagtc 192  Q
    ||||| |||||    
T  17542213 acattcaagtc 17542223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 16972718 - 16972610
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| |||||| |||||||| ||||| | ||||  ||||||| ||||||||||| ||||||||   |||||||||||||  ||| ||| || ||||||    
T  16972718 atattaatgtaagagtcaatttacttattctaattacttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttttccatcaaa 16972619  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  16972618 aagaaataa 16972610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 40448346 - 40448112
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  40448346 cacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactcaa 40448247  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  40448246 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 40448147  T
Q  215 tttcttttgtgtatataacagtttaatcacttatc 249  Q
    |||||||||| ||||||||||||||||||||||||    
T  40448146 tttcttttgtatatataacagtttaatcacttatc 40448112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 35670108 - 35670347
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  35670108 cacttcaagcaaaaacttcaaagcatataccatctcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcctactcaa 35670207  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc------tttaaggtaaagttca 208  Q
    |||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||      ||| | ||||||||||    
T  35670208 agcacaagaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagatttaagaaaatacattcaagtcatatgtttttaagtaaagttca 35670307  T
Q  209 cacacatttcttttgtgtatataacagtttaatcacttatc 249  Q
     |||||||||||||| || ||||| |||||||||| |||||    
T  35670308 tacacatttcttttgcgt-tataatagtttaatcagttatc 35670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 41339594 - 41339831
Alignment:
Q  17 cacttcaagcaaaa--cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcataccca 114  Q
    ||||||||||||||  ||||||||||| || ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41339594 cacttcaagcaaaaaacttcaaagcatggaccatcttttctttcgtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactca 41339693  T
Q  115 aa-gcacaagaa-caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa-tacatttaagtctttaaggtaaagttcacac 211  Q
    || |||| | || ||| | || ||| |||||| || |||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||    
T  41339694 aaagcaccataaacaaagtcataaagtagataatatcaaaacttatcaataaaaaagaaataataaaaatacatttaagtctttaaggtaaagttcatac 41339793  T
Q  212 acatttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||||||| ||||||| | ||||||||||||||    
T  41339794 acatttcttttgtatatataaaaatttaatcacttatc 41339831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 40728771 - 40728947
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  40728771 cacttcaagcaaaaacttcaaagcatagactatctcttctttggtacctaaaatattagtgtaagggtcaatttccttattcaaattggttcatactcaa 40728870  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    ||||| | ||||||| || ||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  40728871 agcaccaaaacaatgtcataaaatagatagtatcaaaacttctcaatcaaaaagatttaagaaaatacattcaagtc 40728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 12773805 - 12774014
Alignment:
Q  47 atctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatag 145  Q
    |||||||||||| |||||||||  |||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||| || || ||||||||    
T  12773805 atctcttctttggtacctaaaaggttagtgtaagtgtcaattttcttatccaaattggttcatactcaaagcacaagaaacaatgtcataagatagatag 12773904  T
Q  146 taacaaaacttctcaatcaaaaagaaataag-aaaatacatttaag------tctttaaggtaaagttcacacacatttcttttgtgtatataacagttt 238  Q
    || ||||||||||||||||||||||| |||| ||||||||||||||      |||||||||||||||||||||||||||| ||||| | ||||| |||||    
T  12773905 taccaaaacttctcaatcaaaaagaattaagaaaaatacatttaagtcatattctttaaggtaaagttcacacacatttcctttgtat-tataatagttt 12774003  T
Q  239 aatcacttatc 249  Q
    |||||||||||    
T  12774004 aatcacttatc 12774014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 18292084 - 18292262
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||    
T  18292084 cacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatcctcaa 18292183  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc 192  Q
    ||||| || ||||||| ||  ||||||||| || |||||||| |||||||||||||| |||| |||||||||| |||||    
T  18292184 agcaccagaaacaatgtcatgaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaaatacattcaagtc 18292262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 34397197 - 34397365
Alignment:
Q  18 acttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaa 116  Q
    ||||||||||||| |||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  34397197 acttcaagcaaaaacttcaaagctcagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttattcaaattgattcatactcaaa 34397296  T
Q  117 gcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaataca 184  Q
    |||| || ||||||| ||  ||||||||| || |||||||| |||||||||||||| ||||||||||||    
T  34397297 gcaccagaaacaatgtcatgaaatagataatatcaaaacttatcaatcaaaaagaattaagaaaataca 34397365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 28266544 - 28266705
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| || |||||||| | || ||| ||||||||||||||    
T  28266544 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaagcaccagaaacaatgtcataaaatagacaatatcaacacttctcaatcaaa 28266643  T
Q  167 aagaaataagaaaatacatttaag------tctttaaggtaaagttcacacacatttcttttg 223  Q
    ||||| |||||||||||||| |||      ||||||| |||||||||||||||||||| ||||    
T  28266644 aagaattaagaaaatacattcaagtcatattctttaa-gtaaagttcacacacatttcatttg 28266705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 44789370 - 44789194
Alignment:
Q  17 cacttcaagcaa-aacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    ||||||| |||| |||||||||||||||| |||||  |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||    
T  44789370 cacttcaggcaataacttcaaagcatagaccatct--tctttggtacctaaaatgttagtgtgagggtcaatttccttatccaaattggttcatactcaa 44789273  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataa-gaaaatacatttaagtc 192  Q
    |||||| | ||| ||| || |||||||||| || |||||||| |||||||| ||||| |||  |||||||||| |||||    
T  44789272 agcacaggaaactatgtcataaaatagataatatcaaaacttatcaatcaacaagaattaataaaaatacattcaagtc 44789194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 23827782 - 23827899
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| ||||||    
T  23827782 atattaatgtaagggttaatttccttatccaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaa 23827881  T
Q  167 aagaaataagaaaataca 184  Q
    ||||||||| || |||||    
T  23827882 aagaaataaaaatataca 23827899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 29271415 - 29271283
Alignment:
Q  50 tcttctttgatacctaaaatattagtgtaaggg-tcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagta 147  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||||||||||||||  |||||||||| |||| || |  |||||||||| ||    
T  29271415 tcttctttgatacctaaaatgttggtgtatgggctcaatttccttgtccaaattggttcatactaaaagcacaagaaacagtgtcgtaaaatagataata 29271316  T
Q  148 acaaaacttctcaatcaaaaagaaataagaaaa 180  Q
     ||||| |||||||||||| |  ||||||||||    
T  29271315 tcaaaaattctcaatcaaacatgaataagaaaa 29271283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 11387755 - 11387647
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaa-gaacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| | ||||||| ||||| ||||||||||||||||||||| ||||||||||  ||||||     |||||||||| ||  ||| |||||| ||||||    
T  11387755 atattaatataagggttaattttcttatccaaattggttcatactcaaagcacaataaacaatattctaaaatagataatataaaatcttctcgatcaaa 11387656  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  11387655 aagaaataa 11387647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 297 - 61
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||    
T  297 cacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattgattcatactcaa 198  T
Q  116 agcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctttaaggtaaagttcacacaca 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  197 agcacaagaacaatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctttaaggtaaagttcatacaca 98  T
Q  215 tttcttttg--tgtatataacagtttaatcacttatc 249  Q
    |||| ||||  | |||||||||||||||||| |||||    
T  97 tttcctttgtatatatataacagtttaatcatttatc 61  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 1690 - 1858
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1690 aaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 1789  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtctt 194  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  1790 aatgccacaaaatagatagtatcaaaacttctcaatcaaaaagaaataagaaaaatacatttaagtctt 1858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 35840955 - 35840786
Alignment:
Q  76 gtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataa 175  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||     
T  35840955 gtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaacaatgccacaaaatagatagtatcaaaacttctcaattaaaaagaaatag 35840856  T
Q  176 g-aaaatacatttaagtctttaaggtaaagttcacacacatttcttttgtgtatataacagtttaatcac 244  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35840855 gaaaaatacatttaagtctttaaggtaaagttcatacacatttcttttgtatatataacagtttaatcac 35840786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 41957811 - 41957975
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||    
T  41957811 aaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactcaaagca-agaaac 41957909  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaatacatttaagtc 192  Q
    |||| || ||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  41957910 aatgtcataaaatagatagtatcaaaacttctcaatcaaaaagatttaagaaaatacattcaagtc 41957975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 40840866 - 40841101
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||    
T  40840866 cacttcaagcaaaaactttaaagcatagaccatctcttctttggtacataaaatgttagtgtaagggtcaatttccttatccaaattagttcatactcaa 40840965  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa-tacattta------agtctttaaggtaaagttc 207  Q
    |||||||| |||||||     | |||||||||| ||||||||||||| ||||||||| |||||||| |||||| |      | |||||||| ||||||||    
T  40840966 agcacaagaaacaatg-----agatagatagtaccaaaacttctcaaacaaaaagaattaagaaaattacattcaattcatattctttaagttaaagttc 40841060  T
Q  208 acacacatttcttttgtgtatataacagtttaatcacttatc 249  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||    
T  40841061 acacacatttcctttgtat-tataatagtttaatcacttatc 40841101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 6150385 - 6150220
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6150385 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 6150286  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaaa 180  Q
    | ||| || ||||||| || |||||||||| || ||||||||  ||||||||||||| ||||||||    
T  6150285 aacaccagaaacaatgtcataaaatagataatatcaaaacttaccaatcaaaaagaattaagaaaa 6150220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 44436967 - 44436790
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||    
T  44436967 cacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcgatttccttatccaaattgattcatactcaa 44436868  T
Q  116 agcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaat-aagaaaatacatttaagtc 192  Q
    ||||| || ||||||| ||  ||||||||| || |||||||| |||||||||||||| | || |||||||||| |||||    
T  44436867 agcaccagaaacaatgtca-taaatagataatatcaaaacttatcaatcaaaaagaattaaaaaaaatacattcaagtc 44436790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 12659338 - 12659439
Alignment:
Q  75 tgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaat 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| |||||||||||||    
T  12659338 tgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaaaagaaat 12659437  T
Q  174 aa 175  Q
    ||    
T  12659438 aa 12659439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22815674 - 22815783
Alignment:
Q  17 cacttcaagcaaaa-cttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaa 115  Q
    |||||||||||||| ||||||| ||||||  |||||||| ||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||    
T  22815674 cacttcaagcaaaaacttcaaatcatagactatctcttcattggtacctaaaatgttaatgtaagggtcaatttcattatccaaattggttcatactcaa 22815773  T
Q  116 agcacaagaa 125  Q
    ||||| ||||    
T  22815774 agcaccagaa 22815783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 10251053 - 10250945
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| |||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||||   ||||||||||| |  ||| |||||| || |||    
T  10251053 atattaatgtaagagtcaatttccttatccaaattggttcatactaaaagcacaagaaacaatgctctaaaatagatagcatgaaatcttctcgataaaa 10250954  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  10250953 aagaaataa 10250945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 32699 - 32911
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaac 126  Q
    |||||||||||||||||| ||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32699 aaaacttcaaagcatagaccatctc--ctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaac 32796  T
Q  127 aatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataagaaa--atacatttaagtctttaaggtaaagttcacacacatttcttttgt 224  Q
    || |||||||||||||||||| |||||||||||||||||||||| |||| |||  |||||||||||| |||||||||||||||| |||||| |||||| |    
T  32797 aaagccacaaaatagatagtatcaaaacttctcaatcaaaaagagataaaaaaagatacatttaagt-tttaaggtaaagttcatacacatatctttttt 32895  T
Q  225 gtatataacagtttaa 240  Q
     ||||||| |||||||    
T  32896 atatataatagtttaa 32911  T

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Target: scaffold1838 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 1041 - 840
Alignment:
Q  27 aaaacttcaaagcatagatcatctcttctttgatacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatacccaaagca-caagaa 125  Q
    ||||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||  ||    
T  1041 aaaacttcaaagcatggaccatctcttctttggtacttaaaatattagtgtaagggtcaatttccttatccaaattggttcata-tcaaagcaccataaa 943  T
Q  126 caatgccacaaaatagatagtaacaaaacttctcaatcaaaaagaaataag-aaaatacatttaagtc----tttaaggtaaagttcacacacatttctt 220  Q
    ||||| || ||| |||| | || |||||||| ||||||||||||||||||| |||||||||| |||||    ||| | |||||||||||||||||||| |    
T  942 caatgtcataaagtagaaaatatcaaaacttatcaatcaaaaagaaataagaaaaatacattcaagtcatatttttaagtaaagttcacacacatttcat 843  T
Q  221 ttg 223  Q
    |||    
T  842 ttg 840  T

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Target: scaffold0120 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 2115 - 2223
Alignment:
Q  68 atattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaa 166  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| ||||||    
T  2115 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaa 2214  T
Q  167 aagaaataa 175  Q
    |||||||||    
T  2215 aagaaataa 2223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 356356 - 356472
Alignment:
Q  69 tattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||   |||||||||||||  ||| |||||| |||||||    
T  356356 tattaatgtaagggtcaatttccttattcaaattggttcatactcaaagcacaagaaacaatgctctaaaatagatagtataaaatcttctcgatcaaaa 356455  T
Q  168 agaaataagaaaataca 184  Q
    |||||||| || |||||    
T  356456 agaaataaaaatataca 356472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 11510 - 11403
Alignment:
Q  69 tattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcac-aagaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||   |||||||||||||  |||  |||||||||||||    
T  11510 tattaatgtaaggatcaatttccttatccaaattggttcatactcaaagcacaaaaaacaatgctctaaaatagatagtataaaattttctcaatcaaaa 11411  T
Q  168 agaaataa 175  Q
    ||||||||    
T  11410 agaaataa 11403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 242430 - 242552
Alignment:
Q  60 tacctaaaatattagtgtaa-gggtcaatttccttatccaaattggttcatacccaaagcacaag-aacaatgccacaaaatagatagtaacaaaacttc 157  Q
    |||||||||| || |||||| |||||||||||||| | ||||||||||||||| ||||||||||| |||||||  | ||| |||||  || |||||||||    
T  242430 tacctaaaatgttggtgtaaagggtcaatttccttgttcaaattggttcatactcaaagcacaagaaacaatgttataaattagatgatatcaaaacttc 242529  T
Q  158 tcaatcaaaaagaaataagaaaa 180  Q
    |||||||||||||| ||||||||    
T  242530 tcaatcaaaaagaattaagaaaa 242552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 89970 - 89863
Alignment:
Q  69 tattagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaa-gaacaatgccacaaaatagatagtaacaaaacttctcaatcaaaa 167  Q
    ||||| ||||||||||||||| | |||||||||||| ||||||  |||||||||  ||||||||   |||||||||||||  ||| ||||||  ||||||    
T  89970 tattaatgtaagggtcaattttcctatccaaattgggtcatacttaaagcacaataaacaatgctctaaaatagatagtataaaatcttctcggtcaaaa 89871  T
Q  168 agaaataa 175  Q
    ||||||||    
T  89870 agaaataa 89863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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