View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18294_low_2 (Length: 598)
Name: NF18294_low_2
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18294_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 4946184 - 4946434
Alignment:
| Q |
16 |
aaaatataaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttgactaaattt |
115 |
Q |
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| T |
4946184 |
aaaatttaaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttgactaaattt |
4946279 |
T |
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| Q |
116 |
aacgagtgaaaagggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgact |
215 |
Q |
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| T |
4946280 |
aacgagtgaaaagggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgact |
4946379 |
T |
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| Q |
216 |
ctatataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
272 |
Q |
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| T |
4946380 |
c--tataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
4946434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 329 - 580
Target Start/End: Original strand, 4946490 - 4946749
Alignment:
| Q |
329 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttggtcttctaacatgttagatttcaactgattaannnnnnnnctctt----- |
423 |
Q |
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| T |
4946490 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttcgtcttctaacatgttagatttcaactgtttaattttgtttttcttttttt |
4946589 |
T |
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| Q |
424 |
---cactttttcagtgcataccacatcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaactt |
520 |
Q |
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| T |
4946590 |
tttcacttttccagtgcataccacatcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaactt |
4946689 |
T |
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| Q |
521 |
gtaagcatactactgtcaaagatcacctatcttaaaattcttaaactcttaagtaatcat |
580 |
Q |
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| T |
4946690 |
gtaagcatactactgtcaaagatcgcctatcttaaaattcttaaactcttaagtaatcat |
4946749 |
T |
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