View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18294_low_3 (Length: 586)
Name: NF18294_low_3
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18294_low_3 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Original strand, 41135101 - 41135653
Alignment:
| Q |
13 |
cagagacataattaaccctaaatttaatgtattatttagtacagtagaaatagaagaagagagaaatnnnnnnnnnnntgttgttgtgttgaaaagtata |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
41135101 |
cagagacataattaaccctaaatttaatgtattatttagtacaatagaaatagaagaagagagaaataaaaaaaaa--tgttgttgtgttgaacagtata |
41135198 |
T |
|
| Q |
113 |
aaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgagttcatctaccttcatgttgctta |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135199 |
aaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgagttcatctaccttcatgttgctta |
41135298 |
T |
|
| Q |
213 |
agtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagtttttcttctgacatcgtttctcc |
312 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135299 |
agtttttggcttcctcaattgttgtgactttcatgccatacttcttaagtaaagatattaggattttcttaaccagtttttcttctgacatcgtttctcc |
41135398 |
T |
|
| Q |
313 |
caaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttggtggtaagg |
412 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41135399 |
caaggcacggaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttggtagtaagg |
41135498 |
T |
|
| Q |
413 |
agttggagccttgacatacgcactttagcagtgctttcatgagtagttttggggatttctcccacatcttttgccacaatgcaagtgtttatcaatctaa |
512 |
Q |
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| T |
41135499 |
agttggagccttgacatacgcactttagcggtgctttcatgagtagttttggggatttctcccacatcttttgccacaatgcaagtgtttatcaatctaa |
41135598 |
T |
|
| Q |
513 |
acatgttcttttcaacaccattgaataaggcatttgatgctttagaattttcaag |
567 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41135599 |
acatgttcttgtcaacaccattgaataaggcatttgatgctttagaatttccaag |
41135653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 463
Target Start/End: Original strand, 22978989 - 22979232
Alignment:
| Q |
220 |
ggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagtttttcttctgacatcgtttctcccaaggca |
319 |
Q |
| |
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|||||||||||| ||||||||||||||| || | ||||| | || ||| | |||||||| ||||||| || || ||||||||| ||||| | || ||| |
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| T |
22978989 |
ggcttcctcaatggttgtgactttcatgtcaaatctcttgggcaaagatgtaaggatttttctaaccagcttctcatctgacatcttttcttctaaagca |
22979088 |
T |
|
| Q |
320 |
cagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttggtggtaaggagttgga |
419 |
Q |
| |
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| | ||||||||||| | | |||| |||| ||||| ||||| |||| ||||| ||| ||||| | || || ||| | || || |||||||| | || |
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| T |
22979089 |
cttgatgtattagcaatttcaagaatattcatatgaaattcatgtatggattcataatctttcatcttgagattctcaaatttagtagtaaggagctaga |
22979188 |
T |
|
| Q |
420 |
gccttgacatacgcactttagcagtgctttcatgagtagttttg |
463 |
Q |
| |
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|| ||||||| ||||||||| ||||| ||||||||| |||||| |
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|
| T |
22979189 |
gctttgacattcgcactttataagtgccttcatgagttgttttg |
22979232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 182 - 555
Target Start/End: Original strand, 17402124 - 17402496
Alignment:
| Q |
182 |
ccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | |||||||| |||| || |||||||||| |||| ||||| ||||||||| |||| |||||| |
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| T |
17402124 |
ccaatgagttcatctaccttcatgttgcttatgtcttgggcttccttaattttta-gactttcatgtcatatttcttaagtaaggatcttagaattttcc |
17402222 |
T |
|
| Q |
282 |
taaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcatt |
381 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||| | |||||| |||||| | |||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
17402223 |
taaccagtttttcttttaacatcgtttctcccaaggcacgtgatgtattaacaatatcaaggatactcatgtgaaagttatgaatggtttcatcataatt |
17402322 |
T |
|
| Q |
382 |
cattctaaggttttcatacttggtggtaaggagttggagccttgacatacgcactttagcagtgctttcatgagtagttttggggatttctcccacatct |
481 |
Q |
| |
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|||||||||||||||| | ||||| |||||||| |||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||||| |
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| T |
17402323 |
cattctaaggttttcaaaattggtagtaaggagctggagccttgacatacacactttagcagtaccttcatgagtagttttgaggatttcccacacatct |
17402422 |
T |
|
| Q |
482 |
tttgccacaatgcaagtgtttatcaatctaaacatgttcttttcaacaccattgaataaggcatttgatgcttt |
555 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
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|
| T |
17402423 |
tttgtcacgatgcaagtgtttatcaatctaaacatgttcttgtcaacaccattgaataatgcattcaatgcttt |
17402496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 23317236 - 23317104
Alignment:
| Q |
180 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
279 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| || | ||||||| ||| |||||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
23317236 |
acccaatgacttcatttaccttcatgttgcttatgtcttaggcttccgtaatgattgtgactttcatgtcatacttcttgggtaaggatctgaggatttt |
23317137 |
T |
|
| Q |
280 |
cttaaccagtttttcttctgacatcgtttctcc |
312 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |
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|
| T |
23317136 |
tctaactagtttttcttctgacatcttttctcc |
23317104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 384
Target Start/End: Original strand, 19563594 - 19563798
Alignment:
| Q |
180 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
279 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | |||||||||||| ||||||||||||||| || | ||||| || ||||| |||||||| |
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|
| T |
19563594 |
acccaattagttcatccaccttcatgttgctaatgtcttgggcttcctcaatggttgtgactttcatgtcaaatctcttggacaaagatatgaggatttt |
19563693 |
T |
|
| Q |
280 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatca |
379 |
Q |
| |
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||||||| || |||| || |||| ||||||| || |||| | ||||||||||| | | |||||| |||||||| ||||| |||| ||||| ||| |
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| T |
19563694 |
tctaaccagcttctcttttggcatcctttctcctaacgcacttcatgtattagcaatgtcaagaatactaatgtgaaaatcatgtatggattcataatct |
19563793 |
T |
|
| Q |
380 |
ttcat |
384 |
Q |
| |
|
||||| |
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|
| T |
19563794 |
ttcat |
19563798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 377
Target Start/End: Complemental strand, 6096047 - 6095850
Alignment:
| Q |
180 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
279 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| || | |||||| ||||| |||||||||||||| || |||||||| ||| ||| | | | |
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|
| T |
6096047 |
acccaataagttcatccaccttcatgttgcttatgtcttgggcttcttcaatggttgtgactttcatatcaaacttcttgggtagagatctgaaaaaaaa |
6095948 |
T |
|
| Q |
280 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcat |
377 |
Q |
| |
|
|||| ||| || | | | |||||| ||||||||||||||| | ||||||||||||| | ||| ||||||||||| |||||||||| |||||||| |
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|
| T |
6095947 |
tttaatcagcttctttccagacatcctttctcccaaggcacttgatgtattagcaatatcaagaattctcatgtgaaattcatgaatggattcatcat |
6095850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 546
Target Start/End: Complemental strand, 11865781 - 11865735
Alignment:
| Q |
500 |
tttatcaatctaaacatgttcttttcaacaccattgaataaggcatt |
546 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||||||||| |
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|
| T |
11865781 |
tttatcaatctgaacatgtttttatcaaccccattgaataaggcatt |
11865735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 439
Target Start/End: Original strand, 9296892 - 9297151
Alignment:
| Q |
180 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
279 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | | |||||||||| | ||||||||||||| || | ||||| | || ||| | |||||||| |
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|
| T |
9296892 |
acccaattagttcatccaccttcatgttgctaatgtcttggtcttcctcaatggctgtgactttcatgtcaaatctcttgggcaaagatctgaggatttt |
9296991 |
T |
|
| Q |
280 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatca |
379 |
Q |
| |
|
||||||| || || ||||||||| |||| || || |||| | ||||||||||| | | |||| |||| ||||||||| |||| ||||| ||| |
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|
| T |
9296992 |
tctaaccagcttctcgtctgacatcttttcccctaaagcacttcatgtattagcaatttcaagaatattcatacaaaagtcatgtatggattcatgatct |
9297091 |
T |
|
| Q |
380 |
ttcattctaaggttttcatacttggtggtaaggagttggagccttgacatacgcacttta |
439 |
Q |
| |
|
||||| || || || ||| | || || || |||||||||||| ||||||| ||||||||| |
|
|
| T |
9297092 |
ttcatcctgagattctcaaatttagtagtgaggagttggagctttgacattcgcacttta |
9297151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 546
Target Start/End: Complemental strand, 2168259 - 2168126
Alignment:
| Q |
413 |
agttggagccttgacatacgcactttagcagtgctttcatgagtagttttggggatttctcccacatcttttgccacaatgcaagtgtttatcaatctaa |
512 |
Q |
| |
|
||||| || |||||||| || ||||||| ||||| || |||||| |||||| |||| || | ||||||| ||||| | |||||||||||||| | | |
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|
| T |
2168259 |
agttgaagtcttgacattcgaactttagaagtgcctttatgagtggttttgaggatctcccaagcatctttggccacggtacaagtgtttatcaacttga |
2168160 |
T |
|
| Q |
513 |
acatgttcttttcaacaccattgaataaggcatt |
546 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||| |
|
|
| T |
2168159 |
acatgttcttgtcaacaacattgaataaagcatt |
2168126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 5298506 - 5298596
Alignment:
| Q |
370 |
ttcatcatcattcattctaaggttttcatacttggtggtaaggagttggagccttgacatacgcactttagcagtgctttcatgagtagtt |
460 |
Q |
| |
|
||||||||| ||||| ||||| |||||| |||||||||| || | ||| ||| ||||||| | |||||||| |||| ||||||||||||| |
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|
| T |
5298506 |
ttcatcatctttcatcctaagattttcaaacttggtggttagaaattgcagctttgacatcctcactttagatgtgccttcatgagtagtt |
5298596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 546
Target Start/End: Complemental strand, 11522067 - 11522024
Alignment:
| Q |
503 |
atcaatctaaacatgttcttttcaacaccattgaataaggcatt |
546 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
11522067 |
atcaatctaaacatgttcttgttaacaccattgaacaaggcatt |
11522024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 537
Target Start/End: Complemental strand, 110925 - 110891
Alignment:
| Q |
503 |
atcaatctaaacatgttcttttcaacaccattgaa |
537 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
110925 |
atcaatctaaacatgttcttgtcaacaccattgaa |
110891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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