View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18294_low_4 (Length: 536)

Name: NF18294_low_4
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18294_low_4
NF18294_low_4
[»] chr2 (14 HSPs)
chr2 (18-527)||(7160282-7160802)
chr2 (18-83)||(7156175-7156240)
chr2 (18-83)||(7168673-7168738)
chr2 (24-83)||(6538843-6538902)
chr2 (21-83)||(7174356-7174418)
chr2 (118-203)||(7174239-7174324)
chr2 (18-82)||(11237696-11237760)
chr2 (118-203)||(6538934-6539019)
chr2 (18-83)||(7199961-7200026)
chr2 (25-90)||(33020323-33020388)
chr2 (18-83)||(33026660-33026725)
chr2 (18-67)||(36577369-36577418)
chr2 (166-202)||(7168557-7168593)
chr2 (18-90)||(13924638-13924710)
[»] chr3 (24 HSPs)
chr3 (18-68)||(2442042-2442092)
chr3 (18-90)||(4142110-4142182)
chr3 (18-68)||(4157942-4157992)
chr3 (18-84)||(2456252-2456318)
chr3 (18-83)||(2631360-2631425)
chr3 (18-67)||(3754603-3754652)
chr3 (18-91)||(9561960-9562033)
chr3 (18-87)||(23197015-23197084)
chr3 (18-90)||(2492085-2492157)
chr3 (18-66)||(2644362-2644410)
chr3 (18-66)||(2659152-2659200)
chr3 (18-90)||(7324407-7324479)
chr3 (18-90)||(7942488-7942560)
chr3 (18-90)||(9594600-9594672)
chr3 (18-77)||(768318-768377)
chr3 (18-84)||(771481-771547)
chr3 (18-68)||(2696730-2696780)
chr3 (18-64)||(9608346-9608392)
chr3 (18-64)||(13498227-13498273)
chr3 (18-67)||(2459278-2459327)
chr3 (18-66)||(754609-754657)
chr3 (18-66)||(1891064-1891112)
chr3 (18-90)||(2476637-2476709)
chr3 (18-62)||(2502151-2502195)
[»] chr7 (4 HSPs)
chr7 (18-76)||(24723357-24723415)
chr7 (19-68)||(3927063-3927112)
chr7 (18-68)||(1078158-1078208)
chr7 (167-203)||(24723488-24723524)
[»] chr6 (10 HSPs)
chr6 (19-76)||(7564741-7564798)
chr6 (18-68)||(370783-370833)
chr6 (19-68)||(176338-176387)
chr6 (25-68)||(1442106-1442149)
chr6 (18-88)||(19119066-19119136)
chr6 (18-88)||(19126360-19126430)
chr6 (19-64)||(9703888-9703933)
chr6 (19-64)||(9819831-9819876)
chr6 (19-67)||(1470922-1470970)
chr6 (18-66)||(24417486-24417534)
[»] chr5 (4 HSPs)
chr5 (18-67)||(11081816-11081865)
chr5 (18-68)||(23766860-23766910)
chr5 (18-68)||(23816708-23816758)
chr5 (18-70)||(3181720-3181772)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-90)||(89147-89218)
[»] chr4 (2 HSPs)
chr4 (21-67)||(55419788-55419834)
chr4 (18-68)||(22672125-22672175)
[»] scaffold0015 (1 HSPs)
scaffold0015 (18-65)||(32330-32377)
[»] chr1 (1 HSPs)
chr1 (19-83)||(51381438-51381502)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 7160802 - 7160282
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatcatcctcgttcttggtctcatgcttgtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7160802 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatcatcctcgttcttggtctcatgcttgtc 7160703  T
Q  118 cactttatgtttctgaggatgatcaagtgctacttgatatgacgtccaagttggttgtttacaattatagagatggtacttttaaggatctccgtgttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||    
T  7160702 cactttatgtttctgaggatgatcaagtgctacttgatatgacgtccaagttggttgtttacaattatagagatggtacttttaaggatttcggtattca 7160603  T
Q  218 aaagacatttagttgttggaattcaaaagtataccaggagagtttaatatcaccttgtccttgaatagtattagtatgtatgttagatgatatgttatgc 317  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  7160602 aaatacatttagttgttggaattcaaaagtataccaggaaagtttaatatcaccttgtccgtgaatagtattagtatgtatgttaaatgatatgttatgc 7160503  T
Q  318 catttgtgtatcaagaatccatccattggatgcttccacttcctaattgcaact-----------tactcacttcatgggttgttgtttaatcattggtc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  7160502 catttgtgtatcaagaatccatccattggatgcttccacttcctaattgcaacttttatatttactactcacttcatgggttgttgtttaatcattggtc 7160403  T
Q  407 ggtggaatttgcagcaagagaaattgctttgttaggtgtaattgatttggttttcttaaattggaatcaagtgttatgtcaagtctcttgtattgtatgt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7160402 ggtggaatttgcagcaagagaaattgctttgttaggtgtaattgatttggttttcttaaattggaatcaagtgttatgacaagtctcttgtattgtatgt 7160303  T
Q  507 ttattaaaatttctgatgatg 527  Q
    |||||||||||||||||||||    
T  7160302 ttattaaaatttctgatgatg 7160282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7156240 - 7156175
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  7156240 gtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatg 7156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7168738 - 7168673
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatg 7168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 6538843 - 6538902
Alignment:
Q  24 cttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 7174418 - 7174356
Alignment:
Q  21 tggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  7174418 tggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 7174324 - 7174239
Alignment:
Q  118 cactttatgtttctgaggatgatcaagtgctacttga---tatgacgtccaagttggttgtttacaattatagagatggtacttttaag 203  Q
    |||||||||||| |||||||||||||||||| || ||   ||||| |   ||||||||||||||||||| |||||||||||||||||||    
T  7174324 cactttatgtttatgaggatgatcaagtgctgctagagtatatgatg---aagttggttgtttacaattctagagatggtacttttaag 7174239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 11237696 - 11237760
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacat 82  Q
    |||||||||||| |||||||||||||||  ||  |||||||||||||||||||||||||| ||||    
T  11237696 gtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 6538934 - 6539019
Alignment:
Q  118 cactttatgtttctgaggatgatcaagtgctacttgatatgacgtccaagttggttgtttacaattatagagatggtacttttaag 203  Q
    |||||||||||| ||||||| |||| ||||| || ||  | | ||| ||||||||||||||||||| ||  |||||||||||||||    
T  6538934 cactttatgtttatgaggataatcaggtgctgctcgagttaaagtcaaagttggttgtttacaattctacggatggtacttttaag 6539019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7200026 - 7199961
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    |||||| |||||||||||| ||||||| |  |||||||| ||| |||||||||||||||| |||||    
T  7200026 gtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttccttacatg 7199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 33020323 - 33020388
Alignment:
Q  25 ttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||||||| |||||||||||  | |||||||||| ||||| |||||||||| ||||| ||||||    
T  33020323 ttatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33020388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 33026660 - 33026725
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    |||||| |||||||| | |||||||||||  | |||||||||| ||||| ||||||||||||||||    
T  33026660 gtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatg 33026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 36577369 - 36577418
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    |||||| |||||||||| ||||||||||| || ||||||| |||||||||    
T  36577369 gtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 7168593 - 7168557
Alignment:
Q  166 agttggttgtttacaattatagagatggtacttttaa 202  Q
    |||||||||||||||||| |||||||||||| |||||    
T  7168593 agttggttgtttacaattctagagatggtacgtttaa 7168557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13924710 - 13924638
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    ||||||||| ||||||||| ||||||| |||| |  |||| ||||||||||||| |||||  |||| ||||||    
T  13924710 gtttggcttttgaaggagtttggaaatgatgaattctggattaaattgttccgtcttcctagcatggaagatc 13924638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2442042 - 2442092
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  2442042 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 2442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 4142182 - 4142110
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  4142182 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 4157992 - 4157942
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  4157992 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 2456252 - 2456318
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 84  Q
    |||||| |||||||||| ||||||||||| || |||||||||||||||| || | ||||| ||||||    
T  2456252 gtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatga 2456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 2631360 - 2631425
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    |||||| |||||||||| ||||||||| | || |||||||||||||||| | |||||||| |||||    
T  2631360 gtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3754603 - 3754652
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    |||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  3754603 gtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9562033 - 9561960
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 91  Q
    |||||| ||||||| |||||||||||| | || |||||||||||||| | | |||||||| ||||| |||||||    
T  9562033 gtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcctaacatgcaagatca 9561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 23197015 - 23197084
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaag 87  Q
    |||||||| |||||||| ||||||||| | || ||||||||||||||||| ||| ||||| |||| ||||    
T  23197015 gtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacataaaag 23197084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 2492085 - 2492157
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||| ||||||||||||||||||||   || ||||||||||||||||   |||||||| ||||| ||||||    
T  2492085 gtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 2492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 2644410 - 2644362
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 66  Q
    |||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2644410 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 2659200 - 2659152
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 66  Q
    |||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2659200 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 7324479 - 7324407
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||| |||||||||| || |||||||| || ||||||||||||||||   |||||||| ||||| ||||||    
T  7324479 gtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 7324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7942488 - 7942560
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||| |||||||||||||||| ||||| || ||||||| |||||||| |  ||||||| ||||| ||||||    
T  7942488 gtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9594672 - 9594600
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||| |||||||  |||| |||||| | || ||||||||||||||||||| ||||||| ||||| ||||||    
T  9594672 gtttggattatgaataagtacggaaatgaagagtcttggactaaattgttccatgttcctaacatgcaagatc 9594600  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 768377 - 768318
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 77  Q
    |||||| ||||||| ||||| |||||| | || ||||||||||||||||||| |||||||    
T  768377 gtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 771547 - 771481
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 84  Q
    |||||| |||||||||| ||||||||||  || |||||||||||||||| ||  |||||| ||||||    
T  771547 gtttgggttatgaaggaatatggaaatacagactcttggactaaattgtaccacgttccttacatga 771481  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2696780 - 2696730
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| |||||||||| ||||||||||| || ||||||| ||||||||||    
T  2696780 gtttggattatgaaggaatatggaaataaagagtcttggattaaattgttc 2696730  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9608392 - 9608346
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaatt 64  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||||    
T  9608392 gtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 13498227 - 13498273
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaatt 64  Q
    |||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498227 gtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 2459278 - 2459327
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    |||||| |||||||||| ||||||||||| || |||||||| ||||||||    
T  2459278 gtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 754657 - 754609
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 66  Q
    |||||| ||||||||||||||||| || | || ||||||||||||||||    
T  754657 gtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 1891112 - 1891064
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 66  Q
    |||||| ||||||||||  |||||||||| || ||||||||||||||||    
T  1891112 gtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 2476637 - 2476709
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    |||||| |||||||  | ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  2476637 gtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatgcaagatc 2476709  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 2502151 - 2502195
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaa 62  Q
    |||||| |||||||||||||||||||||| || | ||||||||||    
T  2502151 gtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 24723357 - 24723415
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 76  Q
    |||||||||||||||||||||  ||||| ||| ||||||||||||||||||| ||||||    
T  24723357 gtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgttcc 24723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1078208 - 1078158
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| |||||||||||||||||||||  || || |||||||||||||||    
T  1078208 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 1078158  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 24723488 - 24723524
Alignment:
Q  167 gttggttgtttacaattatagagatggtacttttaag 203  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  24723488 gttggttgtttacaattctagagatggaacttttaag 24723524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7564798 - 7564741
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 76  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||| |||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcc 7564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 370833 - 370783
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 176338 - 176387
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 1442149 - 1442106
Alignment:
Q  25 ttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 19119066 - 19119136
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 88  Q
    |||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19119066 gtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 19126360 - 19126430
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 88  Q
    |||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19126360 gtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaatt 64  Q
    |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaatt 64  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 1470970 - 1470922
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    ||||| ||||||| || ||||||||||| ||||||||| ||||||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 24417534 - 24417486
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 66  Q
    |||||| ||||||| || ||||||||||| || ||||||||||||||||    
T  24417534 gtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 11081816 - 11081865
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  11081816 gtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 23766910 - 23766860
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23766910 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23766860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 23816758 - 23816708
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23816758 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3181720 - 3181772
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccg 70  Q
    ||||||||||||||||| ||||||||| | || ||||||| ||||||| ||||    
T  3181720 gtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgatccg 3181772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 90  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 55419788 - 55419834
Alignment:
Q  21 tggcttatgaaggagtatggaaataatgattcttggactaaattgtt 67  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 22672175 - 22672125
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 68  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttc 22672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 32377 - 32330
Alignment:
Q  18 gtttggcttatgaaggagtatggaaataatgattcttggactaaattg 65  Q
    ||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  32377 gtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 51381502 - 51381438
Alignment:
Q  19 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 83  Q
    ||||| ||||||| || ||||||||| | || |||||||||||||||||| || ||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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