View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18294_low_6 (Length: 343)
Name: NF18294_low_6
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18294_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 45924515 - 45924198
Alignment:
| Q |
16 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45924515 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
45924416 |
T |
|
| Q |
116 |
caccttctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccacagtactttctcttattgatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45924415 |
caccttctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccacagtactttctcttattgatcc |
45924316 |
T |
|
| Q |
216 |
caataatatcatgcccaataacgctattgcacaataccatgatgttgaatcacctctagacgaacccatgttacgttgtgctatatattatatcaataaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45924315 |
caataatatcatgcccaataacgctattgcacaataccatgatgctgaatcacctctagacgaacccatgttacgttgtgctatatattatatcaataaa |
45924216 |
T |
|
| Q |
316 |
gaaatgatataacctatg |
333 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45924215 |
gaaatgatataacctatg |
45924198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 45936463 - 45936323
Alignment:
| Q |
16 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936463 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
45936364 |
T |
|
| Q |
116 |
caccttctcccacaacatatatctcatcacatgctttgtga |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936363 |
caccttctcccacaacatatatctcatcacatgctttgtga |
45936323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 26303327 - 26303197
Alignment:
| Q |
16 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||| | || ||||||||||||||||| ||||| | ||||| | |
|
|
| T |
26303327 |
ataacaaggccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcacttattgtttgaagtgtct |
26303228 |
T |
|
| Q |
116 |
caccttctcccacaacatatatctcatcaca |
146 |
Q |
| |
|
| || || || ||||| |||||||||||||| |
|
|
| T |
26303227 |
ctccctcgccaacaacgtatatctcatcaca |
26303197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 42240152 - 42240290
Alignment:
| Q |
16 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
115 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| || |||||||| |||||||| ||||| | || || | |
|
|
| T |
42240152 |
ataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttctacaataaatggatcaccacatttttcacttattgtatgaagagtct |
42240251 |
T |
|
| Q |
116 |
caccttctcccacaacatatatctcatcacatgctttgt |
154 |
Q |
| |
|
| ||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
42240252 |
ctccttcacgaaccacatatatctcatcacacgctttgt |
42240290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 12631274 - 12631380
Alignment:
| Q |
16 |
ataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgttt |
115 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||| ||||| |||| |||||||| || ||| |||||| ||||| |||||||| ||||| | |
|
|
| T |
12631274 |
ataacaagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgttaagtgtct |
12631373 |
T |
|
| Q |
116 |
caccttc |
122 |
Q |
| |
|
||||||| |
|
|
| T |
12631374 |
caccttc |
12631380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University