View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18294_low_8 (Length: 312)

Name: NF18294_low_8
Description: NF18294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18294_low_8
NF18294_low_8
[»] chr7 (8 HSPs)
chr7 (155-301)||(32910578-32910724)
chr7 (1-94)||(32910407-32910500)
chr7 (1-94)||(32940487-32940580)
chr7 (8-93)||(32897465-32897550)
chr7 (5-94)||(32921800-32921889)
chr7 (8-94)||(32932266-32932352)
chr7 (189-270)||(32910612-32910693)
chr7 (195-270)||(35880145-35880219)
[»] chr4 (2 HSPs)
chr4 (5-94)||(11822320-11822409)
chr4 (191-247)||(45121171-45121227)
[»] chr2 (5 HSPs)
chr2 (189-247)||(4931585-4931643)
chr2 (212-270)||(4931585-4931643)
chr2 (192-254)||(37300003-37300065)
chr2 (204-254)||(4980336-4980386)
chr2 (204-280)||(37300002-37300078)
[»] chr8 (1 HSPs)
chr8 (189-269)||(26901484-26901564)
[»] scaffold0024 (3 HSPs)
scaffold0024 (206-254)||(132627-132675)
scaffold0024 (193-248)||(142177-142232)
scaffold0024 (211-251)||(142177-142217)
[»] chr6 (2 HSPs)
chr6 (187-270)||(2511405-2511488)
chr6 (189-270)||(2511407-2511488)
[»] chr5 (3 HSPs)
chr5 (204-282)||(6965315-6965394)
chr5 (189-252)||(29919368-29919431)
chr5 (191-269)||(8610329-8610407)
[»] chr1 (2 HSPs)
chr1 (205-254)||(46170410-46170459)
chr1 (234-270)||(47567821-47567857)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 32910578 - 32910724
Alignment:
Q  155 gttcttcttgattactatgaagttactccctgcaatcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 254  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  32910578 gttcttcttgattactatgaagttactccctacgatcttaaatataataaaaaagtcaaatgtatttggtccaaatttaaatcaaatatatttgactttt 32910677  T
Q  255 cgattatatttaagatggagggagtatatatatgtaaatgtattcat 301  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  32910678 tgattatatttaagatggagggagtatatatatgtaaatgtattcat 32910724  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32910407 - 32910500
Alignment:
Q  1 tgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910407 tgtcgtgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaacttagatcttcttcatattggcaaagatgttgag 32910500  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32940487 - 32940580
Alignment:
Q  1 tgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 94  Q
    |||||| ||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  32940487 tgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgag 32940580  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 32897465 - 32897550
Alignment:
Q  8 tttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttga 93  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||||    
T  32897465 tttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagatcttga 32897550  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 32921800 - 32921889
Alignment:
Q  5 gtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 94  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| |||||| ||||||||||| |||| ||||||||||||    
T  32921800 gtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgag 32921889  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 32932266 - 32932352
Alignment:
Q  8 tttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 94  Q
    ||||||||||||||||||||||  ||| | |||||||| |||||||| |||||||||||||||||||| |||||||| ||| |||||    
T  32932266 tttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttcacattggcaatgatattgag 32932352  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 32910693 - 32910612
Alignment:
Q  189 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 270  Q
    |||||||||||||| |||||||||||| ||| || || ||||||  | ||||||||||||||||||  ||||||||||||||    
T  32910693 atcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttttattatatttaagat 32910612  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 35880219 - 35880145
Alignment:
Q  195 aatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 270  Q
    ||||||| |||||| |||||| ||| |||| |||||||||||||||   ||||||||||| | |||||||||||||    
T  35880219 aatataagaaaaaa-tcaaatatatttggtccaaatttaaatcaaacgtatttgactttttgtttatatttaagat 35880145  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 11822320 - 11822409
Alignment:
Q  5 gtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 94  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| |||||| ||||||||||| |||| ||||||||||||    
T  11822320 gtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgag 11822409  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 45121227 - 45121171
Alignment:
Q  191 cttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacattt 247  Q
    |||||||||||  |||||||||||||||| | || ||||||||||||||||||||||    
T  45121227 cttaaatataaacaaaaagtcaaatgtatttagtccaaatttaaatcaaatacattt 45121171  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 4931643 - 4931585
Alignment:
Q  189 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacattt 247  Q
    |||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  4931643 atcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 4931585 - 4931643
Alignment:
Q  212 aaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 270  Q
    |||||||| || || |||||| ||||||||||||||||||||| | |||||||||||||    
T  4931585 aaatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 37300065 - 37300003
Alignment:
Q  192 ttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 254  Q
    ||||||||||  |||||||||||||||| |||||||||||| ||  ||||||||| |||||||    
T  37300065 ttaaatataaataaaaagtcaaatgtatttggttcaaatttcaactaaatacattcgactttt 37300003  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 4980336 - 4980386
Alignment:
Q  204 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 254  Q
    |||||||||||||||||| | ||||||||| |||||||||| |||| ||||    
T  4980336 aaaaagtcaaatgtatatagctcaaatttagatcaaatacaattgattttt 4980386  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37300002 - 37300078
Alignment:
Q  204 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagatggagggagta 280  Q
    |||||||| ||||||| | ||| |||||| || ||||||||||||||||||   |||||||||| | ||| ||||||    
T  37300002 aaaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgactttttatttatatttaaaacggaaggagta 37300078  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 26901564 - 26901484
Alignment:
Q  189 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga 269  Q
    ||||||||||||   | ||||| |||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||    
T  26901564 atcttaaatatatgcacaaagttaaatgtattttgttcaaatttaaatcaaatacatttgactttttgtatatatttaaga 26901484  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 132627 - 132675
Alignment:
Q  206 aaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 254  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||||||    
T  132627 aaagtcaaatgtatttggtccaactttaaaccaaatacatttgactttt 132675  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 142232 - 142177
Alignment:
Q  193 taaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttg 248  Q
    |||||| || |||| |||||||||||| ||||| |||||| |||||||||||||||    
T  142232 taaataaaaaaaaagagtcaaatgtatttggtttaaatttgaatcaaatacatttg 142177  T

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Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 142177 - 142217
Alignment:
Q  211 caaatgtatatggttcaaatttaaatcaaatacatttgact 251  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  142177 caaatgtatttgattcaaatttaaaccaaatacatttgact 142217  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 2511405 - 2511488
Alignment:
Q  187 caatcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 270  Q
    ||||||||||||||   |||| ||||||||| | |  || ||||||| |||||||||||||||||||| | ||| |||||||||    
T  2511405 caatcttaaatatatacaaaaggtcaaatgttttttatttaaatttagatcaaatacatttgactttttgtttagatttaagat 2511488  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 2511488 - 2511407
Alignment:
Q  189 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 270  Q
    ||||||||| |||  |||||||||||||||| || |  |||||||||| ||| ||||||||| ||| |  ||||||||||||    
T  2511488 atcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacatttgaccttttgtatatatttaagat 2511407  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 6965394 - 6965315
Alignment:
Q  204 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga-tggagggagtata 282  Q
    ||||| |||||||||| |||| ||||||| ||| ||||||||||||||||| | ||| || ||||| | |||||||||||    
T  6965394 aaaaaatcaaatgtatttggtccaaatttgaattaaatacatttgactttttgcttaaatataagactcgagggagtata 6965315  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 29919431 - 29919368
Alignment:
Q  189 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactt 252  Q
    ||||||||| |||  ||||||| |||||||| ||||||| ||||| | ||||||||||||||||    
T  29919431 atcttaaatttaagtaaaaagtaaaatgtatttggttcatatttagaacaaatacatttgactt 29919368  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 8610407 - 8610329
Alignment:
Q  191 cttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga 269  Q
    |||||||||||  |||||| ||||||||| ||||  ||||||| || |||| |||||||||||| |  |||||||||||    
T  8610407 cttaaatataagcaaaaagacaaatgtatttggtataaatttagattaaatccatttgactttttgtgtatatttaaga 8610329  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 46170459 - 46170410
Alignment:
Q  205 aaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 254  Q
    |||||| |||||||| |||| |||||||| || |||||||||||||||||    
T  46170459 aaaagtaaaatgtatttggtccaaatttagattaaatacatttgactttt 46170410  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 47567821 - 47567857
Alignment:
Q  234 aatcaaatacatttgacttttcgattatatttaagat 270  Q
    ||||||||||||||||||||| | |||||||||||||    
T  47567821 aatcaaatacatttgactttttgcttatatttaagat 47567857  T

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