View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18295_low_2 (Length: 557)
Name: NF18295_low_2
Description: NF18295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18295_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 48222479 - 48223017
Alignment:
| Q |
1 |
cttgcaagctcactataaaaaacttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222479 |
cttgcaagctcactataaaaaacttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtcc |
48222578 |
T |
|
| Q |
101 |
ctcctaagaaattgttcaatatgtaatctccaacgtttctagcatcttcattggatgataaagagtaaccattgacaccaccaccaattgaaagtatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222579 |
ctcctaagaaattgttcaatatgtaatctccaacgtttctagcatcttcattggatgataaagagtaaccattgacaccaccaccaattgaaagtatgat |
48222678 |
T |
|
| Q |
201 |
tttgatgcctttcttttggcaattttttatgtctatgctcaaactcttgcaaccattgtttgatttggggtcacagtgacctgctagattgagttgaggt |
300 |
Q |
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| T |
48222679 |
tttgatgcctttcttttggcaattttttatgtctatgctcaaactcttgcaaccattgtttgatgtgggatcacagtgacctgctagattgagttgaggt |
48222778 |
T |
|
| Q |
301 |
ttacgaccactaccaaatattgatagaaatgctatattcacaatttcgtatagtccagtgttacatgtttcggtcaatgaaccttctctctcgttttgac |
400 |
Q |
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| T |
48222779 |
ttacgaccactaccaaatattgatagaaatgctatgttcacaatttcgtatagtccagtgttacatgtttcggtcaatgaaccttctctctcgttttgac |
48222878 |
T |
|
| Q |
401 |
cccaataaaccacaatgtctccaccatttgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcc |
500 |
Q |
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| T |
48222879 |
cccaataaaccacaatgtctccaccatttgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcc |
48222978 |
T |
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| Q |
501 |
cattgcaatactattatcagcttgatgcttatcctaagg |
539 |
Q |
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| T |
48222979 |
cattgcaatactattatcagcttgatgcttatcctaagg |
48223017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 17570980 - 17571073
Alignment:
| Q |
24 |
ttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
117 |
Q |
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| T |
17570980 |
ttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
17571073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 44817321 - 44817231
Alignment:
| Q |
27 |
accaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
117 |
Q |
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| T |
44817321 |
accatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
44817231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 44849235 - 44849179
Alignment:
| Q |
33 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
89 |
Q |
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| T |
44849235 |
accaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttga |
44849179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 44838148 - 44838092
Alignment:
| Q |
33 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
89 |
Q |
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| T |
44838148 |
accaagttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttga |
44838092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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