View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18295_low_3 (Length: 397)
Name: NF18295_low_3
Description: NF18295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18295_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 81 - 384
Target Start/End: Complemental strand, 4516929 - 4516626
Alignment:
| Q |
81 |
ccatctccattgcattaacattggaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggtaa |
180 |
Q |
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| T |
4516929 |
ccatctccattgcattaacatttgaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggcaa |
4516830 |
T |
|
| Q |
181 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcattagtggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
280 |
Q |
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| T |
4516829 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcatcattggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
4516730 |
T |
|
| Q |
281 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgctattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4516729 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgttattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
4516630 |
T |
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| Q |
381 |
tatt |
384 |
Q |
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|||| |
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| T |
4516629 |
tatt |
4516626 |
T |
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