View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18295_low_4 (Length: 348)
Name: NF18295_low_4
Description: NF18295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18295_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 962377 - 962717
Alignment:
| Q |
1 |
tccttgttcaatttaatacttggatttattcttgtgtggccttggacggtaacaaaaagattagacataataggaaaataaaatggttgttatccaaata |
100 |
Q |
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| T |
962377 |
tccttgttcaatttaatact-ggatttattcttgtgtggccttggacggtaacaaaaagattagacataataggaaaataaaatggttgttatccaaata |
962475 |
T |
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| Q |
101 |
atagtcaaaatataaagatttccaaaattcaaacaagaatctttatgagatattgagcacattaattgccactagttttacagaagcttctctttctcca |
200 |
Q |
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| T |
962476 |
atagtcaaaatataaagatttccaaaattcaaacaagaatctttatgagatattgagcac----attgccactagttttacataagcttctctttctcca |
962571 |
T |
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| Q |
201 |
acctctataaaaaggaccaaaaccattaccccattgtgccatcacaaacaacactttc-------------ttttgatcattttcactccttttccacaa |
287 |
Q |
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| T |
962572 |
acctctataaaaaggaccaaaaccattacaccattatgccatcacaaacaacactttcatttcaattttcattttgatcattttcactccttttccacaa |
962671 |
T |
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| Q |
288 |
gtttcatcatgactacaatttcattcaaccaccaaccaaacaacat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
962672 |
gtttcatcatgactacaatttcattcaaccaccaaccaaacaacat |
962717 |
T |
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