View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18295_low_5 (Length: 325)

Name: NF18295_low_5
Description: NF18295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18295_low_5
NF18295_low_5
[»] chr5 (4 HSPs)
chr5 (121-304)||(30894436-30894624)
chr5 (21-81)||(30894007-30894067)
chr5 (31-95)||(11891944-11892008)
chr5 (43-95)||(4524054-4524106)
[»] chr6 (3 HSPs)
chr6 (31-95)||(30747652-30747716)
chr6 (31-94)||(6734175-6734237)
chr6 (49-95)||(21813924-21813970)
[»] chr1 (3 HSPs)
chr1 (31-91)||(13684300-13684360)
chr1 (45-95)||(27578624-27578674)
chr1 (59-95)||(49877990-49878026)
[»] chr8 (1 HSPs)
chr8 (31-94)||(7887899-7887962)
[»] scaffold0006 (1 HSPs)
scaffold0006 (33-91)||(109419-109477)
[»] scaffold0406 (1 HSPs)
scaffold0406 (33-88)||(8330-8385)
[»] scaffold0726 (1 HSPs)
scaffold0726 (59-95)||(7202-7238)
[»] chr2 (1 HSPs)
chr2 (39-95)||(12243333-12243389)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 30894436 - 30894624
Alignment:
Q  121 aaacaattcctataaaaaagaacggagggagtaatttaactagagatagtagtgttctatctttcactggaattcga-------ccatttaactctccca 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||       ||||||||||||||||    
T  30894436 aaacaactcctataaaaaagaacggagggagtaatttaactaga--tagtagtgttctatctttcactagaattcgaaccctgaccatttaactctccca 30894533  T
Q  214 actcccttgatcctaattattagttcaaactaacatgttatataaaggaagaaaatcacttttatattatgggttgtatagtggtgcccct 304  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30894534 actcccttgatcctaattattagttcaaactaacttattatataaaggaagaaaatcacttttacattatgggttgtatagtggtgcccct 30894624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 30894007 - 30894067
Alignment:
Q  21 acggatggagtatttaattaaagataatatagtagtaatcacacatatttaagacaacttt 81  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||    
T  30894007 acggatggagtatttaattaaagataatccagtagtaatcacacacatttgagacaacttt 30894067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 11891944 - 11892008
Alignment:
Q  31 tatttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    ||||||||||| |||||| ||||| |||||| |||||||| |||||| ||||||||| |||||||    
T  11891944 tatttaattaaggataatctagtaataatcatacatatttgagacaattttattacttcaacaac 11892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 4524054 - 4524106
Alignment:
Q  43 gataatatagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    |||||| ||||| || ||||||| |||| |||||| |||||||||||||||||    
T  4524054 gataatttagtaatagtcacacacatttcagacaaatttattactccaacaac 4524106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 30747716 - 30747652
Alignment:
Q  31 tatttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    ||||||||||| |||||| ||||| || ||||||||||||  |||||||||||||||||||||||    
T  30747716 tatttaattaaggataatttagtaatagtcacacatatttgggacaactttattactccaacaac 30747652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 6734237 - 6734175
Alignment:
Q  31 tatttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaacaa 94  Q
    |||||||||||| ||||| ||||  |||||||| |||||| |||||||||||||||| ||||||    
T  6734237 tatttaattaaaaataatttagtgataatcaca-atatttgagacaactttattacttcaacaa 6734175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 21813970 - 21813924
Alignment:
Q  49 atagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    |||||| |||||||||| |||| |||||| |||||||||||||||||    
T  21813970 atagtaataatcacacacatttgagacaaatttattactccaacaac 21813924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 13684360 - 13684300
Alignment:
Q  31 tatttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaa 91  Q
    |||||||||||||||||| ||||| |||||||| | |||| |||||| |||||||||||||    
T  13684360 tatttaattaaagataatctagtaataatcacatacatttgagacaaatttattactccaa 13684300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 27578674 - 27578624
Alignment:
Q  45 taatatagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  27578674 taatctagtaataatcacacatatttaagacaacttaattactcaaacaac 27578624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 49877990 - 49878026
Alignment:
Q  59 tcacacatatttaagacaactttattactccaacaac 95  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  49877990 tcacaaatatttaagacaattttattactccaacaac 49878026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 7887899 - 7887962
Alignment:
Q  31 tatttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaacaa 94  Q
    |||||||||||   |||||||||| ||||||||| ||||| |||||||||||||| ||||||||    
T  7887899 tatttaattaagagtaatatagtaataatcacacgtatttgagacaactttattattccaacaa 7887962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 109477 - 109419
Alignment:
Q  33 tttaattaaagataatatagtagtaatcacacatatttaagacaactttattactccaa 91  Q
    |||||||||||||||| ||||| |||||||| | |||| |||||| |||||||||||||    
T  109477 tttaattaaagataatctagtaataatcacatacatttgagacaaatttattactccaa 109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 8330 - 8385
Alignment:
Q  33 tttaattaaagataatatagtagtaatcacacatatttaagacaactttattactc 88  Q
    |||||||||||||||| ||||| |||||||| | |||| |||||| ||||||||||    
T  8330 tttaattaaagataatctagtaataatcacatacattttagacaaatttattactc 8385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7238 - 7202
Alignment:
Q  59 tcacacatatttaagacaactttattactccaacaac 95  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  7238 tcacacacatttgagacaactttattactccaacaac 7202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 12243389 - 12243333
Alignment:
Q  39 taaagataatatagtagtaatcacacatatttaagacaactttattactccaacaac 95  Q
    ||||| |||| ||||| || ||| |||||||| |||||| |||||||||||||||||    
T  12243389 taaaggtaatttagtaatagtcatacatatttcagacaaatttattactccaacaac 12243333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University