View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_10 (Length: 353)
Name: NF18296_high_10
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 40661387 - 40661714
Alignment:
| Q |
18 |
ctatggaccttcaccacatattttcaactttcagtatcatacaatcagtttcgttaaaagttcattgatacttttctatcacaaatcataccagaagcat |
117 |
Q |
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| T |
40661387 |
ctatggaccttcaccacatattttcaactttcagtatcatacaatcagtttcgttaaaagttcattgatacttttctatcacaaatcataccagaagcat |
40661486 |
T |
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| Q |
118 |
tcctctatttccttaagcttaaaccatgggatatgttgcatgttcaccactaaattgattttacagttcattgataaaatataatggacaaacaaaccgg |
217 |
Q |
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| T |
40661487 |
tcctctatttccttaagcttaaaccatgggatatgttgcatgttcaccactaaattgattttacagttcattgataaaatataatggacaaacaaaccgg |
40661586 |
T |
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| Q |
218 |
taaatatttatgtagtcgaaattggtcagagaattctcagctggaagattttcaggatgtgtatggcaaatgccttgtccttccattgttgttaccaact |
317 |
Q |
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| T |
40661587 |
taaatatttatgtagtcgaaattggtcagagaattctcagctggaagattttcaggatgtgtatagcaaatgccttgtccttccattgttgttacc-act |
40661685 |
T |
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| Q |
318 |
cctcgataaacatgtgcggctctgtgctc |
346 |
Q |
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| T |
40661686 |
cgtcgataaacatgtgcggctttgtgctc |
40661714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 11903972 - 11903860
Alignment:
| Q |
224 |
tttatgtagtcgaaattggtcagagaattctcagctggaagattttcaggatgtgtatggcaaatgccttg---tccttccattgttgttaccaactcct |
320 |
Q |
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| T |
11903972 |
tttatgtagtataaattggacagagaattctcacctggaagattttcaggatgtgtatagcaaatgccttgttctccttccaatgttggtatgaactcct |
11903873 |
T |
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| Q |
321 |
cgataaacatgtg |
333 |
Q |
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| T |
11903872 |
cgataaacatgtg |
11903860 |
T |
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