View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_13 (Length: 300)
Name: NF18296_high_13
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 55648638 - 55648917
Alignment:
| Q |
10 |
ttttttaaaagattttaacatat--aggaactgaaattgaaaattggattaaactataggagaagattaatttaacctatattattattactaactagct |
107 |
Q |
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| T |
55648638 |
ttttttaaaagattttaacatatataggaactgaaattgaaaattggattaaactataggagaagattaatttaacctatattattattactaactagct |
55648737 |
T |
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| Q |
108 |
ttaggagagctttgaaatgtcatcctcatgcacaggttgctgttgcttttacgagctttattaccaagctaccttaggatcaattttacaaacaaagaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55648738 |
ttaggagagctttgaaatgtcatcctcatgcacaggttgctgttgcttttacgagctttattaccaagctaccttaggatcaattttacaaacaaagaca |
55648837 |
T |
|
| Q |
208 |
caatggaacagacttgaatcaaccc-nnnnnnnnncttgttagtaattgtgttcttttgtgatttaccaccctcattatt |
286 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55648838 |
caatggaacaaacttgaatcaacccttttttttttcttgttagtaattgtgttcttttgtgatttaccaccctcattatt |
55648917 |
T |
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