View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_16 (Length: 267)
Name: NF18296_high_16
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 30957064 - 30957324
Alignment:
| Q |
1 |
cgaactctgtcaatgttgttatcatttcaactacattttgattaaaagaaattgcaagactttgatcccctaacagctgtaattcatagtttaagaattt |
100 |
Q |
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| T |
30957064 |
cgaactctgtcaatgttgttatcatttcaactacattttgattaaaagaaattgcaagactttgatcccctaacagctgtaattcatagtttaagaattt |
30957163 |
T |
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| Q |
101 |
atcattgcaaattgggcaagagtgacacactcggtgcctagcattaaaattgccgatcaagatattcaagaaccaaaccgactaaacttggatgtgtttg |
200 |
Q |
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| T |
30957164 |
atcattgcaaattgggcaagagtgacacactcggtgcctagcattaaaattgccgatcaagatattcaagaaccaaaccgactaaacttggatgtgtttg |
30957263 |
T |
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| Q |
201 |
caattttgatacttgaagtactattagaataactttttgtattaatgtgtatattattcga |
261 |
Q |
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| T |
30957264 |
caattttgatacttgaagtactattagaataactttttgtattaatgtgtatattattcga |
30957324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 30962753 - 30962906
Alignment:
| Q |
3 |
aactctgtcaatgttgttatcatttcaactacattttgattaaaagaaattgcaagactttgatcccctaacagctgtaattcatagtttaagaattta- |
101 |
Q |
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| T |
30962753 |
aactcagtcactgttgttatcatttcgactacatttttattaaaagaaatttgaagactttgatccactagcatctgtaattccttgtttaagattttac |
30962852 |
T |
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| Q |
102 |
tcattgcaaattgggcaagagtgacacactcggtgcctagcattaaaattgccg |
155 |
Q |
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| T |
30962853 |
tcattgcaaattgagcaagagtgacatgttccgtgccttgcattaaacttgccg |
30962906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 30932421 - 30932560
Alignment:
| Q |
15 |
gttgttatcatttcaactacattttgattaaaagaaattgcaagactttgatcccctaacagctgtaattcatagtttaagaattta-tcattgcaaatt |
113 |
Q |
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| T |
30932421 |
gttgttatcatttccactacatttttgttaaaagaaatttgaagactttggtccactagcagctgtaattccttgtttaagattttactcaatgcaaatt |
30932520 |
T |
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| Q |
114 |
gggcaagagtgacacactcggtgcctagcattaaaattgc |
153 |
Q |
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| T |
30932521 |
cggcaagagcgacacgctcggtgccttgcattaaacttgc |
30932560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 30966358 - 30966455
Alignment:
| Q |
162 |
atattcaagaaccaaaccgactaaacttggatgtgtttgcaattttgatac-ttgaagtactattagaataactttttgtattaatgtgtatattatt |
258 |
Q |
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| T |
30966358 |
atattcaagaacaaaaccgactaaagttggatgtgtttgcaattttgatacattgaattactattagaacatctttctgtattaatgtgtatagtatt |
30966455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 30936066 - 30936150
Alignment:
| Q |
162 |
atattcaagaaccaaaccgactaaacttggatgtgtttgcaattttgatac-ttgaagtactattagaataactttttgtattaa |
245 |
Q |
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| T |
30936066 |
atatttaagaaccaaactgactaaatttggatgtgtttgcaatgttgatacattcaagtacgattagaatatttttgtgtattaa |
30936150 |
T |
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