View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_19 (Length: 247)
Name: NF18296_high_19
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 26573221 - 26572977
Alignment:
| Q |
18 |
aaagttatatttagttggtctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaa |
117 |
Q |
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| T |
26573221 |
aaagttatatttagttggtctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaa |
26573122 |
T |
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| Q |
118 |
tgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagggctcaaccatgcataaaaggttaaact---------------attatgttatc |
202 |
Q |
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| T |
26573121 |
tgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagggctcaaccatgcataaaaggttaaactcatactgttttggtgattatgttatc |
26573022 |
T |
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| Q |
203 |
aacagataaatgttagagaaaatttatttcatatcttcagtgttt |
247 |
Q |
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| T |
26573021 |
aacagataaatgttagagaaaatttatttcatatcttcagtgttt |
26572977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 10350382 - 10350221
Alignment:
| Q |
36 |
tctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaagaaga----gaa--agaaatcattcttaaacaaatttcagagaatgtgaaagaaaa |
129 |
Q |
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| T |
10350382 |
tctcgtaaaaagatcctttcgaactgtgtatgcaaaaacttgaagaagaagaagaagaagaaaacattcttaagaaaatttcagagaatgtgacagaaaa |
10350283 |
T |
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| Q |
130 |
aattgatgaaggattgcagaactaagaactttagggctcaaccatgcataaaaggttaaact |
191 |
Q |
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| T |
10350282 |
aattgatgaaggaatgcagaactaagaactttagggctcaaccatgcataaaaggttaaact |
10350221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 10345839 - 10345736
Alignment:
| Q |
65 |
atgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagg |
164 |
Q |
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| T |
10345839 |
atgcaaaagcttgaagaagaggaagaaaacattcttaagaaaatttcagagaatgtgaaagaaaaaattgatgaaggaatgcagaactaagaacttcagg |
10345740 |
T |
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| Q |
165 |
gctc |
168 |
Q |
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|||| |
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| T |
10345739 |
gctc |
10345736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 10378287 - 10378076
Alignment:
| Q |
53 |
tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact |
152 |
Q |
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||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
10378287 |
tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaact |
10378188 |
T |
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| Q |
153 |
aagaactttagggctcaacc--atgcataaaaggttaaact---------------attatgttatcaacagataaatgttagagaaaatttatttcata |
235 |
Q |
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|||| |||||| ||| ||| ||||||||||||| ||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
10378187 |
aagacctttagtactctaccatatgcataaaaggtcaaactcatacttttttggtgattttgttagcaacagatgaatgttagagaaaatttatttcata |
10378088 |
T |
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| Q |
236 |
tcttcagtgttt |
247 |
Q |
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| T |
10378087 |
tcttcagtgttt |
10378076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 10339363 - 10339246
Alignment:
| Q |
51 |
cttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaa |
150 |
Q |
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| T |
10339363 |
cttttgaacagtgtatgcaaaagcttgaagaagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaa |
10339264 |
T |
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| Q |
151 |
ctaagaactttagggctc |
168 |
Q |
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| T |
10339263 |
ccaagaactttagtgctc |
10339246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 10370049 - 10369915
Alignment:
| Q |
51 |
cttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaa |
150 |
Q |
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| T |
10370049 |
cttttgaacagtgtatgcaaaagtttgaagaagaggaagagaacgttctgaaagaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaa |
10369950 |
T |
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| Q |
151 |
ctaagaactttagggctcaaccatgcataaaaggt |
185 |
Q |
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|||||||||| || |||| |||||||||||||||| |
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| T |
10369949 |
ctaagaacttaagtgctccaccatgcataaaaggt |
10369915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 10342278 - 10342069
Alignment:
| Q |
53 |
tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact |
152 |
Q |
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||||||| |||||||| ||||||||||| ||| |||||| | |||| ||||||||| ||||||||| ||||| |||||||||||||| | |||||| |
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| T |
10342278 |
tttgaacagtgtatgcgaaagcttgaagcagatgaagaaaacgttctgaaacaaattcttgagaatgtggaagaagaaattgatgaaggaaagtagaact |
10342179 |
T |
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| Q |
153 |
aagaactttagggctcaaccatgcataaaaggttaaact---------------attatgttatcaacagataaatgttagagaaaatttatttcatatc |
237 |
Q |
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||| | ||||| || |||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10342178 |
aagtattttagtactttaccatgcataaatggttaaactcatacttttttggtgattttgttaacaacagataaatgttagagaaaatttatttcatatc |
10342079 |
T |
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| Q |
238 |
ttcagtgttt |
247 |
Q |
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|||||||||| |
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| T |
10342078 |
ttcagtgttt |
10342069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 10363555 - 10363504
Alignment:
| Q |
196 |
tgttatcaacagataaatgttagagaaaatttatttcatatcttcagtgttt |
247 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10363555 |
tgttaacaagagataaatgttagagaaaatttatttcatatcttcggtgttt |
10363504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 10363665 - 10363609
Alignment:
| Q |
53 |
tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatt |
109 |
Q |
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| T |
10363665 |
tttgaacagtgtatgcaaaagcttgaagcagatgaagaaaacattctgaaacaaatt |
10363609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 10363613 - 10363579
Alignment:
| Q |
129 |
aaattgatgaaggattgcagaactaagaactttag |
163 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
10363613 |
aaattgatgaaggaatgcagaactaagaactttag |
10363579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 10370247 - 10370211
Alignment:
| Q |
18 |
aaagttatatttagttggtctcgtaaaaagatccttt |
54 |
Q |
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| T |
10370247 |
aaagttaaatttagttggtctcataaaaagatccttt |
10370211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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