View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_2 (Length: 600)
Name: NF18296_high_2
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 3 - 584
Target Start/End: Original strand, 41705355 - 41705937
Alignment:
| Q |
3 |
ccaccaatgtcagaagacagccacatgcaaatctcaaacaaattaatcaaaattaaatgctctttcctaccattcaattaatgactctcgtctcgtctct |
102 |
Q |
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| T |
41705355 |
ccaccaatgtcagaagatagccacatgcaaatctcaaacaaattaatcaaaattaaatgctctttcctaccattcaattaatgactctcgtctcgtctct |
41705454 |
T |
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| Q |
103 |
acaatttgccagacctacactgcacacgccaccaccaccatttaattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtact |
202 |
Q |
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| T |
41705455 |
acaatttgccagacctacactgcacacgccaccaccaccatttaattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtact |
41705554 |
T |
|
| Q |
203 |
cttcatc-tttcattaataaccgtaattcaattcccaacctctttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcac |
301 |
Q |
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| T |
41705555 |
cttcatcgtttcattaataaccgtaattcaattcccaacctctttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcac |
41705654 |
T |
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| Q |
302 |
cgcacctcagccggcttgatgaaaaaaccgccgctgatgatcttgaaaacattggactcgctattgatttactcctccgccatgaacttcctccatctcc |
401 |
Q |
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| T |
41705655 |
cgcacctcagccggcttgatgaaaaaaccgccgccgatgatcttgaaaacattggactcgctattgatttactcctccgccatgaacttcctccatctcc |
41705754 |
T |
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| Q |
402 |
agcgtatctaacacttgactccgacaacggaaagaatcccctccgccggaaaaacggtgatttcattcctctataatatctgaacgagaacactctagac |
501 |
Q |
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| T |
41705755 |
ggcgtatctaacacttgactccgacaacggaaagaatcccctccgccggaaaaacggtgatttcattcctctataatatctgaacgagaacactctagac |
41705854 |
T |
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| Q |
502 |
ttccctaatgaaccaaacggcgacggtcttttactccagaaactgttactccctcttcgataccgccacggtgaggttgtggc |
584 |
Q |
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| T |
41705855 |
ttccctaatgaaccaaacggcgacggtcttttactccagaaactgttactccctcttcgataccgccacggtgaggttgtggc |
41705937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 131 - 476
Target Start/End: Original strand, 45334867 - 45335209
Alignment:
| Q |
131 |
ccaccaccaccatttaattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatctttcattaataaccgtaattc |
230 |
Q |
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| T |
45334867 |
ccaccaccaccatctaattactcc-tttcattgacatctatcaccaaccatattcttccatgtgtctgtcctcttcctcattcgttaaaaactgtaattt |
45334965 |
T |
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| Q |
231 |
aattcccaacctctttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaacc |
330 |
Q |
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| T |
45334966 |
a-ttctcatc-tcttttcacttcattgttgtcggttaaatctctccggcgaaagcaacgccactggattaccgcatcgcagccggctcgacgagaatact |
45335063 |
T |
|
| Q |
331 |
gccgctgatgatcttgaaaacattggactcgctattgatttactcctccgccatgaacttcctccatctccagcgtatctaacacttgactccgacaacg |
430 |
Q |
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|||| ||||||||| |||||||| |||||| |||||||| |||| |||||||||||||| ||||| || | |||||||||||||| ||||||| |||| |
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| T |
45335064 |
gccgttgatgatctcgaaaacatcggactcactattgatgtactactccgccatgaactccctccgtcgtcggcgtatctaacactcaactccgataacg |
45335163 |
T |
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| Q |
431 |
gaaagaatcccctccgccggaaaaacggtgatttcattcctctata |
476 |
Q |
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|||||||||| || || |||||||||||||||||||| ||||||| |
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| T |
45335164 |
gaaagaatcctctttgctggaaaaacggtgatttcatttctctata |
45335209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 6980437 - 6980375
Alignment:
| Q |
15 |
gaagacagccacatgcaaatctcaaaca--aattaatcaaaattaaatgctctttcctaccat |
75 |
Q |
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||||| |||||||||||||||||||| | |||||||||| |||||||||| ||||||||||| |
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| T |
6980437 |
gaagatagccacatgcaaatctcaaagagcaattaatcaatattaaatgctttttcctaccat |
6980375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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