View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18296_high_20 (Length: 244)

Name: NF18296_high_20
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18296_high_20
NF18296_high_20
[»] chr1 (4 HSPs)
chr1 (12-226)||(8455312-8455526)
chr1 (22-197)||(48769984-48770158)
chr1 (15-226)||(43403664-43403874)
chr1 (171-226)||(9094802-9094857)
[»] scaffold0060 (1 HSPs)
scaffold0060 (36-226)||(19004-19194)
[»] chr2 (2 HSPs)
chr2 (15-226)||(40275225-40275436)
chr2 (18-62)||(38346587-38346631)
[»] chr4 (2 HSPs)
chr4 (12-186)||(3958749-3958928)
chr4 (22-226)||(1558152-1558355)
[»] chr5 (1 HSPs)
chr5 (22-226)||(18979956-18980159)
[»] chr8 (2 HSPs)
chr8 (12-226)||(19168264-19168499)
chr8 (15-226)||(26155365-26155569)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 8455526 - 8455312
Alignment:
Q  12 gataattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8455526 gataattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttgt 8455427  T
Q  112 ttagcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgt 211  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  8455426 ttagcagttcaggtttcttttgattacaagcaacgcttaagctagatgctagtagtatctttgcattttaggagtagttttggctcgttttctcttgtgt 8455327  T
Q  212 tttctctctttgtat 226  Q
    |||||||||||||||    
T  8455326 tttctctctttgtat 8455312  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 48769984 - 48770158
Alignment:
Q  22 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 121  Q
    |||||||||||||  |||| |||||| |||||||| |||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| |||||||| |     
T  48769984 tcttagtgggatatttttgattgtttagatatttgatctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagcagctt 48770083  T
Q  122 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggctt 197  Q
    |||||||||||||||| |||||||||||||  |||||||||| ||| | ||||||| |||||||||||||||||||    
T  48770084 aggtttcttttgattaaaagcaaagcttaa-ttagatgctagaagtttctttgcatcttaggagtagttttggctt 48770158  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 43403874 - 43403664
Alignment:
Q  15 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 114  Q
    |||||| ||| |||||||||  |||| |||||||||| |||||| ||||| |  | ||||| | | | ||||| ||||| ||||||||||||||| | ||    
T  43403874 aattctttctcagtgggatatttttgattgttttgatttttggtatttctatgttgtagtgctagtt-tgttggtgaacatggctgcttttccttgtata 43403776  T
Q  115 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 214  Q
    ||| || |||||||||||||||  ||||| ||||||| |||||||||||  || | ||||||| |||||||||||||||| ||| ||||||||||   ||    
T  43403775 gcaatttaggtttcttttgattttaagcacagcttaaactagatgctagatgtttatttgcatcttaggagtagttttggtttgctttctcttgtacgtt 43403676  T
Q  215 ctctctttgtat 226  Q
    ||||||||||||    
T  43403675 ctctctttgtat 43403664  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9094802 - 9094857
Alignment:
Q  171 tttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 226  Q
    ||||||| ||||||  |||||||||||||||| |||||||| |||||| |||||||    
T  9094802 tttgcatcttaggaaaagttttggcttgttttttcttgtgtgttctctgtttgtat 9094857  T

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Target: scaffold0060 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 19004 - 19194
Alignment:
Q  36 atttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtttcttttgat 135  Q
    ||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  19004 atttgattgttttgatatttggtctttctcttttatagtgctagatatgttgatgaacttggctgcttttcattgtttagcagttcaggtttcttttgat 19103  T
Q  136 tacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 226  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19104 tacaagcaaagcttaagctagatgctagtagtatctttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 19194  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 40275225 - 40275436
Alignment:
Q  15 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 114  Q
    |||||| |||||||||||||  |||| |||||||||| ||||||||||||||  | ||||| | | ||||||| ||||| ||||||||||||||| ||||    
T  40275225 aattctttcttagtgggatatttttgattgttttgatttttggtctttctctgctgtagtgctagttatgttggtgaacatggctgcttttccttgttta 40275324  T
Q  115 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 214  Q
    |||| | |||||||||||||||  ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | ||    
T  40275325 gcagcttaggtttcttttgattttaagcaaagcttaaactagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgtt 40275424  T
Q  215 ctctctttgtat 226  Q
    ||||||||||||    
T  40275425 ctctctttgtat 40275436  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 38346631 - 38346587
Alignment:
Q  18 tctatcttagtgggatagatttgtttgttttgatatttggtcttt 62  Q
    |||||||| |||||||||||  | |||||||||||||||||||||    
T  38346631 tctatcttggtgggatagataggattgttttgatatttggtcttt 38346587  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 3958928 - 3958749
Alignment:
Q  12 gataattctatcttagtgggatagatttgtttgttttg-----atatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttc 106  Q
    ||||||||||||||||| ||||||||||| ||||||||     |||||||||||||||||| ||||||| |  |||||||| ||||||||||||| ||||    
T  3958928 gataattctatcttagttggatagatttgattgttttgtttcaatatttggtctttctcttttatagtgctaaatatgttggtgaacttggctgcatttc 3958829  T
Q  107 cttatttagcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagt 186  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  3958828 cttgtttagcagtttaggtttcttttgattacaagcaaagcttaagctaaatgctagaagtttctttgcatcttaggagt 3958749  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 1558355 - 1558152
Alignment:
Q  22 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 121  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | |||| || ||||||| ||||| || |     
T  1558355 tcttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggcagcatttccttgtttagaagctt 1558256  T
Q  122 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 221  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||| |||||||||| |||||||||| | |||| ||||    
T  1558255 aggtttcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtaattttggcttgctttctcttgtatgttctttctt 1558157  T
Q  222 tgtat 226  Q
    |||||    
T  1558156 tgtat 1558152  T

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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 18979956 - 18980159
Alignment:
Q  22 tcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttc 121  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| ||||| || |     
T  18979956 tcttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagtagctt 18980055  T
Q  122 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 221  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | |||||||||    
T  18980056 aggtttcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgttctctctt 18980154  T
Q  222 tgtat 226  Q
    |||||    
T  18980155 tgtat 18980159  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 19168264 - 19168499
Alignment:
Q  12 gataattctatcttagtgggatagatttg-tttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttcctta 110  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||| || ||||     
T  19168264 gataattctatcttagtgtgatagatttgattttttttgatatttggtctttctcttttatagtgctagatatgttggtgaacttggctgcatt-ccttg 19168362  T
Q  111 tttagcagttcaggt---------------------ttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagt 189  Q
    |||||||||| ||||                     |||||||||||||||||||||||||| ||||||||||| ||||| || |||| |||||| ||||    
T  19168363 tttagcagtttaggtttctgttttttgatattaggtttcttttgattacaagcaaagcttaatctagatgctagaagtatcttcgcatcttaggaatagt 19168462  T
Q  190 tttggcttgttttctcttgtgttttctctctttgtat 226  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19168463 tttggcttgtttcctcttgtgttttctctctttgtat 19168499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 26155365 - 26155569
Alignment:
Q  15 aattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttattta 114  Q
    |||||| |||||||||||||  |||| ||||||||||||||       ||||| | ||||| | ||| ||||| ||||||||||||| ||||||| ||||    
T  26155365 aattctttcttagtgggataattttgattgttttgatattt-------ctcttttttagtgctagatgtgttggtgaacttggctgcatttccttgttta 26155457  T
Q  115 gcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgtttt 214  Q
    |||| | |||||||||||||||| ||||||||||||| ||||||||||| |||   ||||||| |||||||||||||||||||| ||||||||||   ||    
T  26155458 gcagcttaggtttcttttgattaaaagcaaagcttaatctagatgctagaagttactttgcatcttaggagtagttttggcttgctttctcttgtaggtt 26155557  T
Q  215 ctctctttgtat 226  Q
    ||||||||||||    
T  26155558 ctctctttgtat 26155569  T

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