View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18296_high_3 (Length: 589)

Name: NF18296_high_3
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18296_high_3
NF18296_high_3
[»] chr8 (16 HSPs)
chr8 (1-573)||(5887153-5887724)
chr8 (342-527)||(5843308-5843494)
chr8 (342-527)||(5850050-5850236)
chr8 (13-198)||(5984557-5984742)
chr8 (13-198)||(5949029-5949214)
chr8 (1-190)||(5843014-5843203)
chr8 (28-198)||(5921152-5921322)
chr8 (1-190)||(5849756-5849945)
chr8 (17-198)||(5960298-5960479)
chr8 (344-527)||(5960544-5960720)
chr8 (344-485)||(5921386-5921524)
chr8 (344-485)||(5984806-5984944)
chr8 (344-485)||(5949278-5949416)
chr8 (90-163)||(39916637-39916710)
chr8 (534-572)||(5985016-5985054)
chr8 (404-454)||(41351576-41351626)
[»] chr2 (3 HSPs)
chr2 (36-169)||(42788930-42789063)
chr2 (382-487)||(42789098-42789203)
chr2 (133-169)||(27172818-27172854)
[»] chr7 (2 HSPs)
chr7 (108-173)||(45676080-45676145)
chr7 (117-163)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (113-163)||(44674039-44674089)
chr3 (108-168)||(34626700-34626760)
[»] chr5 (2 HSPs)
chr5 (113-163)||(1281333-1281383)
chr5 (397-454)||(2590612-2590669)
[»] chr1 (2 HSPs)
chr1 (113-163)||(16127411-16127461)
chr1 (107-173)||(37962858-37962924)
[»] chr4 (1 HSPs)
chr4 (111-163)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 5887153 - 5887724
Alignment:
Q  1 acatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5887153 acatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaact 5887252  T
Q  101 tccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatataaatgaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  5887253 tccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccgcatctctgcagacctacacacatcatgatatataaatgatca 5887352  T
Q  201 taaaatacg--aatttattaatttagagaactatagtattgtataagatatgtttaataagannnnnnnnnnagggaactatatacttaatgaaataata 298  Q
    ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||||          ||||||||||||||||||||||||| ||    
T  5887353 taaaataagaaaatttattaatttagagaactatagtattgtataagatatgtttaacaaga--ttttttttagggaactatatacttaatgaaatagta 5887450  T
Q  299 aagcacacttnnnnnnnnngtatagtggttaagaannnnnnncagtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgat 398  Q
    ||||||||||         ||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5887451 aagcacactt-aaaaaaaagtatagtggttaagaatttttttcagtaccagcaagttttggtacagagctccagcagcaatcttgtccataagttgtgat 5887549  T
Q  399 gtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgttt 498  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887550 gtatttgatgagcttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgttt 5887649  T
Q  499 cttttctccttagtttgatgaataagtcttttggcttagcttaagaacagaataggttgcattaaattatgaaat 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887650 cttttctccttagtttgatgaataagtcttttggcttagcttaagaacagaataggttgcattaaattatgaaat 5887724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 342 - 527
Target Start/End: Original strand, 5843308 - 5843494
Alignment:
Q  342 agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 441  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843308 agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 5843407  T
Q  442 ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttg-tttcttttctccttagtttgatgaataagtct 527  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5843408 ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttttcttttctccttagtttgatcaataagtct 5843494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 342 - 527
Target Start/End: Original strand, 5850050 - 5850236
Alignment:
Q  342 agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 441  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850050 agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 5850149  T
Q  442 ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttg-tttcttttctccttagtttgatgaataagtct 527  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5850150 ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttttcttttctccttagtttgatcaataagtct 5850236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 5984557 - 5984742
Alignment:
Q  13 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 112  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984557 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5984656  T
Q  113 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatataaatgaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  5984657 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacatatcatgatatacaaatgaa 5984742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 5949029 - 5949214
Alignment:
Q  13 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 112  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949029 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5949128  T
Q  113 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatataaatgaa 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  5949129 atcaggtcttagataatttatccatcttaatcttcaactctttccacatctctgcagacctacacatatcatgatatacaaatgaa 5949214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 5843014 - 5843203
Alignment:
Q  1 acatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaact 100  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5843014 acattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaact 5843113  T
Q  101 tccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatata 190  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  5843114 tccacgttttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacacatcatgatata 5843203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 5921152 - 5921322
Alignment:
Q  28 tgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 127  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  128 atttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatataaatgaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatacaaatgaa 5921322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 5849756 - 5849945
Alignment:
Q  1 acatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaact 100  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5849756 acattggaggaaaagaagaagagcaattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaact 5849855  T
Q  101 tccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatata 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||    
T  5849856 tccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacatatcatgatata 5849945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 5960298 - 5960479
Alignment:
Q  17 aaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatca 116  Q
    |||||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5960298 aaaagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatca 5960397  T
Q  117 ggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatataaatgaa 198  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  5960398 ggtcttagataatttatccatcttaatctacaactctttccacatctctccagacctacacacatcatgatatacaaatgaa 5960479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 344 - 527
Target Start/End: Original strand, 5960544 - 5960720
Alignment:
Q  344 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 443  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5960544 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5960640  T
Q  444 gttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgtttcttttctccttagtttgatgaataagtct 527  Q
     || |||||||  ||||| || ||||| ||||||| ||    |||||||| ||||||||||||||||||||||| || ||||||    
T  5960641 tttaaccttctgtttgttgcaacaagaatgatgtctca----tgatgtctagtttcttttctccttagtttgatcaaaaagtct 5960720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 344 - 485
Target Start/End: Original strand, 5921386 - 5921524
Alignment:
Q  344 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 443  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5921386 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5921482  T
Q  444 gttgaccttctccttgttacagcaagagtgatgtcccatgat 485  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5921483 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5921524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 344 - 485
Target Start/End: Original strand, 5984806 - 5984944
Alignment:
Q  344 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 443  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5984806 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5984902  T
Q  444 gttgaccttctccttgttacagcaagagtgatgtcccatgat 485  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5984903 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5984944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 485
Target Start/End: Original strand, 5949278 - 5949416
Alignment:
Q  344 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 443  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| |||||  | ||||||||||||||||||||||||||||||||||||| ||||||    
T  5949278 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtactatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5949374  T
Q  444 gttgaccttctccttgttacagcaagagtgatgtcccatgat 485  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5949375 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 39916710 - 39916637
Alignment:
Q  90 tgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    |||| |||| ||||||| || | ||||||||| |||||||| |||||||| |||||||| || |||||||||||    
T  39916710 tgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 5985016 - 5985054
Alignment:
Q  534 ttagcttaagaacagaataggttgcattaaattatgaaa 572  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  5985016 ttagcttaagaatagaatatgttgcattaaattatgaaa 5985054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 41351576 - 41351626
Alignment:
Q  404 tgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct 454  Q
    ||||||||||||||||||||||||| ||||| || ||||| || |||||||    
T  41351576 tgatgagtttttcatcttcttcaggggaccaaagacctctcttaaccttct 41351626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 42788930 - 42789063
Alignment:
Q  36 atatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 135  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  42788930 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatcc 42789029  T
Q  136 atcttaatctgcaactctttccacatctctgcag 169  Q
    |||| || |||||||| |||||||||||||||||    
T  42789030 atctcaacctgcaactttttccacatctctgcag 42789063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 382 - 487
Target Start/End: Original strand, 42789098 - 42789203
Alignment:
Q  382 tgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtccca 481  Q
    ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||  || || |||||||||||||| ||||    
T  42789098 tgtccataattagtgatgtagttgatgagtttttcatcttcttctggtgaccatagtcctcttttcaccttctgtttattgcagcaagagtgatgcccca 42789197  T
Q  482 tgattg 487  Q
    | ||||    
T  42789198 ttattg 42789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 27172818 - 27172854
Alignment:
Q  133 tccatcttaatctgcaactctttccacatctctgcag 169  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27172818 tccatcttaatctgcaactctttccacatctttgcag 27172854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 45676080 - 45676145
Alignment:
Q  108 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacct 173  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| ||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 45676145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 48892630 - 48892676
Alignment:
Q  117 ggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  48892630 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  113 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 34626700 - 34626760
Alignment:
Q  108 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgca 168  Q
    |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| ||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgca 34626760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  113 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    |||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 2590669 - 2590612
Alignment:
Q  397 atgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct 454  Q
    |||||| | |||||||| |||||||||||||||||||| || ||||| || |||||||    
T  2590669 atgtatctaatgagtttctcatcttcttcaggtgaccaaaggcctctcttaaccttct 2590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  113 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37962924 - 37962858
Alignment:
Q  107 tttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacct 173  Q
    |||||||||||| || |  ||||||||||||||||| ||||||||||| ||||| || |||| ||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacct 37962858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  111 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 163  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University