View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_4 (Length: 510)
Name: NF18296_high_4
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 45482221 - 45482482
Alignment:
| Q |
9 |
acatcatcaaaatccattaagtattgacatgttacgaaaaatatgtcacttcaacnnnnnnnn---tggattgagggaccaaactaaaagtgataaatat |
105 |
Q |
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| T |
45482221 |
acatcatcaaaatccattaaatattgacatgttaggaaaaatatgtcacttcaacaaaaaaaaaaatggattgagggaccaaactaaa-gtgataaatat |
45482319 |
T |
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| Q |
106 |
ttcctgnnnnnnngtgataatatttgcaaggtctaatagaaagaattatcaattgtagtgatcaatactcaagtttgctatatttcaaaagagtatttac |
205 |
Q |
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| T |
45482320 |
ttcgctaaaaaaagtgataatatttgcaaggtctaatagaaagaattatcaattgtagtgatcaaaactcaagtttgctatatttcaaaagagtatttac |
45482419 |
T |
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| Q |
206 |
atatttaagttttgattaattattttccgtat----cttagcacatttcagattatagaaatt |
264 |
Q |
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| T |
45482420 |
atatttaagtcttgattacttattttccgtacgtacctgagcacatttcagattatagaaatt |
45482482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 334 - 470
Target Start/End: Original strand, 45482552 - 45482688
Alignment:
| Q |
334 |
cttaaatcaaacacataaaatttgaccaaatgtgtactaatatctattatagtagttgaaaatgcctcaaattcgatggattcaaccaagttttgttgaa |
433 |
Q |
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| T |
45482552 |
cttaaatcaaacacacaaaatttgaccaaatgtgtactaatatctattatagtagttgaaaatgcctcaaattcgatggattcaaccaagttttgttgaa |
45482651 |
T |
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| Q |
434 |
aaatgacacaataaagagatattggaatttcaggttt |
470 |
Q |
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| T |
45482652 |
aaatgacacaataaagagatattggaatttcaggttt |
45482688 |
T |
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