View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_6 (Length: 455)
Name: NF18296_high_6
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 442
Target Start/End: Original strand, 54714455 - 54714879
Alignment:
| Q |
23 |
cacaaaaggataaacaaattggtgatctactattgtttcaatattaataaattatgtggtaaatataacagctattgttcaaggtacactaaaatatgta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714455 |
cacaaaaggataaacaaattggtgatctactattgtttcaatattaataagttatgtggtaaatataacagctattgttcaaggtacactaaaatatgta |
54714554 |
T |
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| Q |
123 |
ataacattggtcgcgattccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttat |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54714555 |
ataacattggtcgtgattccattgtggctaaaagcggtaaccctaacgctgaaatccttccatgatcagagattgcggccatggtttgtgtgttatttat |
54714654 |
T |
|
| Q |
223 |
atctatc--------tatatacgtatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgt |
314 |
Q |
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| T |
54714655 |
atctatctatctatatatatatatatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgt |
54714754 |
T |
|
| Q |
315 |
tggtttgatgcatgcatgtcaaccattccatactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtatatatatt |
414 |
Q |
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| T |
54714755 |
tggtttgatgcgtgcatgtcaaccattccatactcgatttgagaccaggcaatgtgaagg---atcacagctatgattgtgaactgaaagtatatatatt |
54714851 |
T |
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| Q |
415 |
gattgaaataaattcacatgcttgtttc |
442 |
Q |
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| T |
54714852 |
gattgaaataaattcacatgcttgtttc |
54714879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 235 - 442
Target Start/End: Original strand, 54680649 - 54680855
Alignment:
| Q |
235 |
acgtatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgc--atg |
332 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
54680649 |
acgtatcaaatcaaataaatgtatttatgtgagatgatattgatatctgtatccatttaccggattctcgagtgatttgttggtttgatgcatgcatatg |
54680748 |
T |
|
| Q |
333 |
tcaaccattccatactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
432 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54680749 |
tcaatcattccatactcgatttgagaccatgcaatgtgaagg---atcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
54680845 |
T |
|
| Q |
433 |
tgcttgtttc |
442 |
Q |
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|||||||||| |
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| T |
54680846 |
tgcttgtttc |
54680855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 140 - 375
Target Start/End: Original strand, 54721516 - 54721740
Alignment:
| Q |
140 |
tccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgta |
239 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
54721516 |
tccattgtggctaagagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt- |
54721614 |
T |
|
| Q |
240 |
tcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca |
339 |
Q |
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| T |
54721615 |
----atcaaataaatgtgtgtatgtgtga------tgatatctgtattttattgccggattctcgagtaatttg-tggtttgatgcacgcatgtcaacca |
54721703 |
T |
|
| Q |
340 |
-ttccatactcgatttgagaccatgcaatgtgaagga |
375 |
Q |
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|||||||||||||| || |||| ||| ||||||||| |
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| T |
54721704 |
tttccatactcgattcgaaaccaggcattgtgaagga |
54721740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 140 - 375
Target Start/End: Original strand, 5297669 - 5297893
Alignment:
| Q |
140 |
tccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgta |
239 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
5297669 |
tccattgtggctaagagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt- |
5297767 |
T |
|
| Q |
240 |
tcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca |
339 |
Q |
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| T |
5297768 |
----atcaaataaatgtgtgtatgtgtga------tgatatctgtactttattgccggattctcgagtaatttg-tggtttgatgcatgcatgtcaacca |
5297856 |
T |
|
| Q |
340 |
-ttccatactcgatttgagaccatgcaatgtgaagga |
375 |
Q |
| |
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||| ||||||||||||| |||| ||| ||||||||| |
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| T |
5297857 |
tttcgatactcgatttgaaaccaggcattgtgaagga |
5297893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 5398845 - 5398892
Alignment:
| Q |
172 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
219 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
5398845 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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