View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_high_7 (Length: 425)
Name: NF18296_high_7
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 47797870 - 47797651
Alignment:
| Q |
1 |
ctcattgcatgactttctactgcggagaagatacacacgcatacacacacactttggtaacttgaaaagggacttcaaatttttctatgattataattag |
100 |
Q |
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| T |
47797870 |
ctcattgcatgactttctactgcggaaaagatacacacgcatacacacacactttggtaacttgaaaagggaattcaaatttttctatgattataattag |
47797771 |
T |
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| Q |
101 |
gaattgagggagtatacacacaaatataaatggcatccacattttgatgaccaaaaaacatttctcctgtagatactagtcattaccactattccagtaa |
200 |
Q |
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| T |
47797770 |
gaattgagggagtatacacacaaatataaatggcatccacattttgatgaccaaaaaacatttctcctgtagatactagtcattaccactattccagtaa |
47797671 |
T |
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| Q |
201 |
aataatattggacaaacact |
220 |
Q |
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| T |
47797670 |
aataatattggacaaacact |
47797651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 47797586 - 47797474
Alignment:
| Q |
285 |
ggaacgaattgaaaataacatgaccagcagtatcctcttaattaagtggcaaaattccgagcagaacattaataatatgaagttgaaccataaactatat |
384 |
Q |
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| T |
47797586 |
ggaatgaaatgaaaataacatgaccagcagtatcctcttaattaagtggcaaaattccgagcagaacattaataatatgaagttgaaccataaactatat |
47797487 |
T |
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| Q |
385 |
tactgattagaac |
397 |
Q |
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| T |
47797486 |
tactgattagaac |
47797474 |
T |
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