View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18296_low_10 (Length: 380)
Name: NF18296_low_10
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_low_10 |
 | |
|
| [»] scaffold0153 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 11238129 - 11237760
Alignment:
| Q |
1 |
aatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaatagaaattaacatacaggttgcagttagggagttgaagaatcccggtt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11238129 |
aatgaacaataatccatgaagtaatcagcaaacaaaaggtacataacacaaatagaaattaacatacaggttgcagttagggagttgaagaatcccggtt |
11238030 |
T |
|
| Q |
101 |
cttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11238029 |
cttcataaacctcatgcacaagtgacataacatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
11237930 |
T |
|
| Q |
201 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11237929 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
11237830 |
T |
|
| Q |
301 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaatgcccaacattcccta |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11237829 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaacgcccaacattcccta |
11237760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 101 - 353
Target Start/End: Original strand, 7168415 - 7168657
Alignment:
| Q |
101 |
cttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| || || ||||| |||||||||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
7168415 |
cttcataaacctcatgcacaagtgacgtaacatagtatcta-------cattattacatgcattctaccgtta---agaacaaggtgatatcaaactctc |
7168504 |
T |
|
| Q |
201 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
300 |
Q |
| |
|
|| || |||| | |||||| ||| | ||||||| | ||| |||| |||||||| | ||||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
7168505 |
ctgataaacttgagggaccaaccaccgattgatgtgttgaatttcaggagttttaaacgtaccatctctagaattgtaaacaaccaactcagcttgatac |
7168604 |
T |
|
| Q |
301 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggaca |
353 |
Q |
| |
|
| |||| ||| || ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7168605 |
ttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggaca |
7168657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 352
Target Start/End: Original strand, 7199764 - 7199944
Alignment:
| Q |
172 |
tattaagaacatggtgatatcaaactctcttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctag |
271 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| | || || | | ||||||| | ||| |||||||||| |||| |
|
|
| T |
7199764 |
tattaagaacaaagtgatatcaaactctgttggtagacttgtggaaccatccaaccatctgtgctttggatttcaagactcttaaaagtaccatccctag |
7199863 |
T |
|
| Q |
272 |
aattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggac |
352 |
Q |
| |
|
||||||||| ||||||| ||||| ||| |||||||| |||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
7199864 |
aattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgccttggtataaggac |
7199944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 7174233 - 7174338
Alignment:
| Q |
246 |
aagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggta |
345 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||||| | | || ||| |||||||| |||||||||||| |||||||||||| || ||| |
|
|
| T |
7174233 |
aagagtcttaaaagtaccatctctagaattgtaaacaaccaacttcatcatatactctagcagcacttgatcatcctcataaacataaagtgcctttgta |
7174332 |
T |
|
| Q |
346 |
taagga |
351 |
Q |
| |
|
|||||| |
|
|
| T |
7174333 |
taagga |
7174338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 29390 - 29344
Alignment:
| Q |
4 |
gaacaataatccatgaattaatcagcaaacaaaaggtacataacaca |
50 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
29390 |
gaacaataatccatgaagtaaccagcaaacaaaaggtacataacaca |
29344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University