View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18296_low_12 (Length: 343)

Name: NF18296_low_12
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18296_low_12
NF18296_low_12
[»] chr3 (7 HSPs)
chr3 (38-343)||(44523175-44523479)
chr3 (233-343)||(16861075-16861185)
chr3 (233-343)||(17561705-17561815)
chr3 (233-328)||(42760241-42760336)
chr3 (234-343)||(20350565-20350674)
chr3 (235-340)||(44233313-44233418)
chr3 (265-336)||(21343518-21343586)
[»] chr8 (8 HSPs)
chr8 (233-340)||(40075078-40075185)
chr8 (233-343)||(20859621-20859731)
chr8 (233-343)||(39491053-39491163)
chr8 (232-326)||(7120845-7120939)
chr8 (265-336)||(31746013-31746081)
chr8 (236-343)||(35551615-35551722)
chr8 (233-328)||(39831102-39831197)
chr8 (236-306)||(37656859-37656929)
[»] chr4 (5 HSPs)
chr4 (233-343)||(30703964-30704074)
chr4 (233-343)||(9013886-9013996)
chr4 (233-343)||(8111432-8111542)
chr4 (260-343)||(44680091-44680174)
chr4 (233-294)||(40061047-40061108)
[»] chr6 (2 HSPs)
chr6 (233-327)||(24719887-24719981)
chr6 (234-343)||(24885042-24885151)
[»] chr7 (8 HSPs)
chr7 (233-343)||(37345120-37345230)
chr7 (233-328)||(41734137-41734232)
chr7 (233-343)||(19804506-19804616)
chr7 (233-294)||(5541609-5541670)
chr7 (233-294)||(14102414-14102475)
chr7 (233-294)||(14412431-14412492)
chr7 (265-336)||(35839367-35839435)
chr7 (257-297)||(45256957-45256997)
[»] chr5 (3 HSPs)
chr5 (233-343)||(38971640-38971750)
chr5 (233-340)||(36503019-36503126)
chr5 (233-343)||(38408484-38408594)
[»] chr2 (4 HSPs)
chr2 (233-343)||(6637480-6637590)
chr2 (232-313)||(10334381-10334462)
chr2 (232-343)||(36652851-36652962)
chr2 (233-302)||(14002465-14002534)
[»] chr1 (9 HSPs)
chr1 (233-343)||(45829147-45829257)
chr1 (233-343)||(21140971-21141081)
chr1 (233-343)||(47505902-47506012)
chr1 (233-343)||(11197443-11197553)
chr1 (233-343)||(38119527-38119637)
chr1 (233-343)||(38127507-38127617)
chr1 (233-338)||(4208342-4208447)
chr1 (265-336)||(15696758-15696826)
chr1 (288-336)||(51291610-51291657)
[»] scaffold0238 (1 HSPs)
scaffold0238 (233-294)||(18951-19012)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 38 - 343
Target Start/End: Original strand, 44523175 - 44523479
Alignment:
Q  38 gatgggaatgttgtgtggtgtgatttggaaagaagaatggcatccagtgatggtgatcactccctacgctctaggctgggggtacgtacggagggatcga 137  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| || ||||    
T  44523175 gatgggaatgttgtgtggtgtgatttggaaagcagcatggcatccaatgatggtgatcactccctacgctctaggccgggg-tacgtacggatgggtcga 44523273  T
Q  138 tgcatcattaacgtcgacgatacgtagccgaagaggatataataattggacaaattattctctaccttttgggagggaaatatagaaaattagcattgac 237  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44523274 tgcatcattaacgtcgaagatacgtagccgtaggggatataataattggacaaattattctctaccttttgggagggaaatatagaaaattaccattgac 44523373  T
Q  238 acatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgaggt 337  Q
    ||||||||||||| ||||||||| || |||||||| ||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||| |||||    
T  44523374 acatttggttaggttgaaacacacgagtaatttacctaaatatccttcgacagttaattgtcgaattttgtggaaatcggctgcagttaacaactgaggt 44523473  T
Q  338 tttcct 343  Q
    ||||||    
T  44523474 tttcct 44523479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 16861075 - 16861185
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||| || ||||||||||| ||  ||| |||  | ||| ||| |||||||||| |||    
T  16861075 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccctcgacagttaactgtcgaagttttagaaaaccggatgcagttaactacc 16861174  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  16861175 gaggatttcct 16861185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 17561705 - 17561815
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||| || |||||| ||||| || |||||||| ||||||||| | ||||||||| ||| ||| |||  | ||| ||||||||||||||  ||    
T  17561705 ttgacacatttgatttggctgagacacacgagtaatttacctaaatgtcccttgacagttaactgccgaaattttagaaaaccggctgcagttaactccc 17561804  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  17561805 gaggatttcct 17561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 42760336 - 42760241
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaac 328  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||| |||||| | ||||| | | ||||||| |||  | |||||| |||||||    
T  42760336 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccttcgccggttaactaccgaattttgtggttaccggctgtagttaac 42760241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 20350565 - 20350674
Alignment:
Q  234 tgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccg 333  Q
    ||||| |||||||| |||||| | | || | ||||||| |||||||| | ||| ||||||||||  ||| |||  | |||| ||||||||||||| ||||    
T  20350565 tgacatatttggtttggctgagatatataagtaatttatttaaatgttcatcggcagttaattgtcgaagttttagaaaattggctgcagttaactaccg 20350664  T
Q  334 aggttttcct 343  Q
    || |||||||    
T  20350665 agattttcct 20350674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 44233418 - 44233313
Alignment:
Q  235 gacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccga 334  Q
    ||||||||||||| | |||| ||||| | ||||||||| ||||||| | | | ||||||| ||| ||| ||| |||||| || || ||||||||  ||||    
T  44233418 gacacatttggtttgactgagacacacggataatttacctaaatgttcattggcagttaactgccgaagtttgtggaaaccgactacagttaactcccga 44233319  T
Q  335 ggtttt 340  Q
    ||||||    
T  44233318 ggtttt 44233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 21343586 - 21343518
Alignment:
Q  265 taatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgagg 336  Q
    ||||||||  |||||||||||||||||||| ||| |||  |||||| || |||||||||||||| |||||||    
T  21343586 taatttaccgaaatgtccttcgacagttaactgccgaa--ttatgg-aaccggctgcagttaactaccgagg 21343518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 40075078 - 40075185
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||| ||| |||||||   |||| ||| |||||||||| |||    
T  40075078 ttgacacatttggttaggctgagacacacgagtaatttacttaaatgcccttcgacagttaagtgccgaattttgaagaaagcggttgcagttaactacc 40075177  T
Q  333 gaggtttt 340  Q
    ||||||||    
T  40075178 gaggtttt 40075185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 20859731 - 20859621
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| ||||| ||  ||||||| ||||||||| ||||||||||| ||| ||| ||| |||||| |||||||| |||||  ||    
T  20859731 ttgacacatttggtttggctgagacacacgaggaatttacctaaatgtccctcgacagttaactgccgaagtttgtggaaaccggctgcatttaactccc 20859632  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  20859631 gaggatttcct 20859621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 39491053 - 39491163
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||| ||||| ||||| || |||||||| |||||||| |||| ||||||| ||  ||||||||| |||| ||||| ||||||||  ||    
T  39491053 ttgacacatttggttaagctgagacacacgagtaatttacataaatgtctttcggcagttaactgtcgaattttatagaaaccggctacagttaacttcc 39491152  T
Q  333 gaggttttcct 343  Q
    ||| |||||||    
T  39491153 gagattttcct 39491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 7120845 - 7120939
Alignment:
Q  232 attgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagtta 326  Q
    |||||||||||| ||| |||||| | ||| || |||||||  ||||| ||||||| ||||||| ||||||||||||  |||| ||||||||||||    
T  7120845 attgacacatttagtttggctgagaaacacgagtaatttatctaaatatccttcggcagttaactgctgaattttaaagaaaccggctgcagtta 7120939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 31746081 - 31746013
Alignment:
Q  265 taatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgagg 336  Q
    ||||||||| |||||||||||| ||||||| ||| |||  |||||| ||||||||||||||||| |||||||    
T  31746081 taatttactaaaatgtccttcggcagttaactgccgaa--ttatgg-aatcggctgcagttaactaccgagg 31746013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 35551615 - 35551722
Alignment:
Q  236 acacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgag 335  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||| |||  || |||| ||  ||||||  |||||| || ||| ||||||| || |||    
T  35551615 acacatttggttaggctgagacacacgagtaatttacctaaatgtcattcagcatttaactgtcgaatttagtggaaaccgactgtagttaactactgag 35551714  T
Q  336 gttttcct 343  Q
     |||||||    
T  35551715 attttcct 35551722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 39831102 - 39831197
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaac 328  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||| || |||  |||||| ||| ||| |||  | ||| ||||||||||||||    
T  39831102 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccctcggtagttaactgccgaaattttagaaaaccggctgcagttaac 39831197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 37656929 - 37656859
Alignment:
Q  236 acacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaatttt 306  Q
    |||||||||||| |||| ||| |||||| ||||||||| |||| ||||||  ||||||| ||| |||||||    
T  37656929 acacatttggtttggcttaaaaacatgagtaatttactcaaatatccttcagcagttaactgccgaatttt 37656859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 30703964 - 30704074
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||| | |||| ||||||| |||  |||||| |||||| |||||||||||||| |||    
T  30703964 ttgacacatttggttaggctgagacacacgagtaatttacttaaatgccattcggcagttaactgccaaattttgtggaaaccggctgcagttaactacc 30704063  T
Q  333 gaggttttcct 343  Q
     ||||||||||    
T  30704064 aaggttttcct 30704074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 9013996 - 9013886
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||  |||||| ||||||| ||| ||||||| ||| || |||||||||||||| | |    
T  9013996 ttgacacatttggttaggctgagacacacgagtaatttacctaaattcccttcggcagttaactgccgaattttgtggcaaccggctgcagttaactatc 9013897  T
Q  333 gaggttttcct 343  Q
    |||||||||||    
T  9013896 gaggttttcct 9013886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 8111542 - 8111432
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| | ||| || |||||||  ||||||||| ||| ||||||||||  ||| ||| |||||| |||||||||||||| |||    
T  8111542 ttgacacatttggtttggctgagatacacgagtaatttatctaaatgtccatcggcagttaattgtcgaagtttgtggaaaccggctgcagttaactacc 8111443  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  8111442 gaggatttcct 8111432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 44680174 - 44680091
Alignment:
Q  260 atgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgaggttttcct 343  Q
    |||| |||||||| ||||||||||||||||||||| ||| ||| |||  | ||| |||| ||||||||| ||||||| ||||||    
T  44680174 atgagtaatttacctaaatgtccttcgacagttaactgccgaagttttagtaaaccggcggcagttaactaccgaggatttcct 44680091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 40061047 - 40061108
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaa 294  Q
    ||||||||||| ||| |||||||||||| || |||||||| |||||| || ||| |||||||    
T  40061047 ttgacacatttagtttggctgaaacacacgagtaatttacctaaatgcccctcggcagttaa 40061108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 24719887 - 24719981
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaa 327  Q
    |||||||||||| ||||||||| ||||| || |||||||| ||||||||||||| ||||||| ||| ||| ||| ||||||||||||||||||||    
T  24719887 ttgacacatttgattaggctgagacacacgactaatttacctaaatgtccttcggcagttaactgccgaagtttgtggaaatcggctgcagttaa 24719981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 24885042 - 24885151
Alignment:
Q  234 tgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccg 333  Q
    ||||||||||| ||||| ||| ||||| |  |||||||  |||||| |||| | ||| ||| ||| ||||||| || ||| |||||||| ||||| ||||    
T  24885042 tgacacatttgattaggttgagacacacgggtaatttatctaaatgccctttggcagataactgccgaattttgtgaaaaacggctgcaattaactaccg 24885141  T
Q  334 aggttttcct 343  Q
    ||||||||||    
T  24885142 aggttttcct 24885151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 37345230 - 37345120
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||| ||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||| ||  |||||||||||| | || |||||||||||  ||    
T  37345230 ttgacatatttggttaggctgagacacacgagtaatttacctaaatgtccttcggcagttaactgtcgaattttatggataccgactgcagttaactccc 37345131  T
Q  333 gaggttttcct 343  Q
    ||| |||||||    
T  37345130 gagattttcct 37345120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 41734137 - 41734232
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaac 328  Q
    |||||||||||||||||||||| || || || ||||||| ||||||| |||||| ||||||| ||  ||||||| |||| | ||||| ||||||||    
T  41734137 ttgacacatttggttaggctgagacgcacgagtaatttatttaaatgcccttcggcagttaactgtcgaattttgtggataccggctacagttaac 41734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 19804616 - 19804506
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||| ||| |||||| ||||| || |||||||| |||||| || |||  |||||| ||| ||| ||| |||||| ||||||||||||||  ||    
T  19804616 ttgacacattttgtttggctgagacacacgagtaatttacctaaatgcccctcggtagttaactgccgaagtttgtggaaaccggctgcagttaactgcc 19804517  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  19804516 gaggatttcct 19804506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 5541670 - 5541609
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaa 294  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||| |||| | |||||||    
T  5541670 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgccctttggcagttaa 5541609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 14102475 - 14102414
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaa 294  Q
    ||||||||||||||| |||||| | |||||| ||| ||||| ||||| || |||||||||||    
T  14102475 ttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaa 14102414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 14412492 - 14412431
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaa 294  Q
    ||||||||||||||| |||||| | |||||| ||| ||||| ||||| || |||||||||||    
T  14412492 ttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaa 14412431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 35839367 - 35839435
Alignment:
Q  265 taatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgagg 336  Q
    ||||||||| ||||| | |||||||||||||||| |||  |||||| || |||||||||||||| |||||||    
T  35839367 taatttactgaaatgcctttcgacagttaattgccgaa--ttatgg-aaccggctgcagttaactaccgagg 35839435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 45256957 - 45256997
Alignment:
Q  257 cacatgaataatttacttaaatgtccttcgacagttaattg 297  Q
    ||||||| |||||||| ||||||||||||| ||||||||||    
T  45256957 cacatgagtaatttacctaaatgtccttcggcagttaattg 45256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 38971750 - 38971640
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||| ||| ||||| || |||||||| |||||| |||||| ||||||| | | ||||||| |||||| ||||||||||||||  ||    
T  38971750 ttgacacatttggttaggttgagacacacgactaatttacctaaatgcccttcggcagttaactcccgaattttgtggaaaccggctgcagttaactgcc 38971651  T
Q  333 gaggttttcct 343  Q
    || ||||||||    
T  38971650 gaagttttcct 38971640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 36503019 - 36503126
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||| |||||||||| | || | ||||| || |||||||| ||||||||||||  |||| |||||  ||||||| |||| || ||||||||||||| |||    
T  36503019 ttgatacatttggtttgactaagacacacgagtaatttacctaaatgtccttctgcagtcaattgtcgaattttgtggatattggctgcagttaactacc 36503118  T
Q  333 gaggtttt 340  Q
    ||||||||    
T  36503119 gaggtttt 36503126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 38408594 - 38408484
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||| |||||| || |||| ||| ||| |||  | ||| || | |||||||||  ||    
T  38408594 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgcccttcggcaattaactgccgaagttttagaaaaccgacggcagttaactccc 38408495  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  38408494 gaggatttcct 38408484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 6637480 - 6637590
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||||| |||| ||||| || |||||||| |||| |||| |||  |||||| ||| ||| ||| |||||| |||||||||||||| |||    
T  6637480 ttgacacatttggttagactgagacacacgagtaatttacctaaacgtccctcggtagttaactgccgaagtttgtggaaaccggctgcagttaactacc 6637579  T
Q  333 gaggttttcct 343  Q
    |||||||||||    
T  6637580 gaggttttcct 6637590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 10334381 - 10334462
Alignment:
Q  232 attgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaa 313  Q
    ||||||||||||||||| || || |||||||| |||||||| ||||||||| ||| ||||||| ||| ||||||||||||||    
T  10334381 attgacacatttggttaagcagagacacatgagtaatttacctaaatgtccatcggcagttaactgccgaattttatggaaa 10334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 343
Target Start/End: Original strand, 36652851 - 36652962
Alignment:
Q  232 attgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaac 331  Q
    |||||||||||||||| |||||| ||||| || |||||||||||||||||| ||| ||||||| ||  ||| |||  | ||| ||| |||||||||| |     
T  36652851 attgacacatttggtttggctgagacacacgagtaatttacttaaatgtccatcggcagttaactgtcgaagttttagaaaaccggatgcagttaactat 36652950  T
Q  332 cgaggttttcct 343  Q
    ||||| ||||||    
T  36652951 cgaggatttcct 36652962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 14002465 - 14002534
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaa 302  Q
    ||||||||||||||| |||||| | ||| || ||| ||||| |||||||| ||| ||||||| |||||||    
T  14002465 ttgacacatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactgctgaa 14002534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 45829257 - 45829147
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||||| | | | |||| |||||||||||||| |   |||  |||||| || |||||||| ||||||||||||||||||||| |||    
T  45829257 ttgacacatttggttaggctaagatatatgagtaatttacttaaatatttatcggtagttaactgttgaattttgtggaaatcggctgcagttaactacc 45829158  T
Q  333 gaggttttcct 343  Q
     ||||||||||    
T  45829157 aaggttttcct 45829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 21140971 - 21141081
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| ||||| || |||||||| |||||||||||||||| |||| ||| ||| |||  | ||| || | ||||||||| |||    
T  21140971 ttgacacatttggtttggctgagacacacgagtaatttacctaaatgtccttcgacaattaactgccgaagttttagaaaaccgacggcagttaacgacc 21141070  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  21141071 gaggatttcct 21141081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 47506012 - 47505902
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |||||| ||||| || |||||||  |||||| |  ||| ||||||||||| ||| |||  | |||||||||||||||||| | |    
T  47506012 ttgacacatttggtttggctgagacacaagagtaatttatctaaatgcctctcggcagttaattgccgaagttttagaaaatcggctgcagttaactatc 47505913  T
Q  333 gaggttttcct 343  Q
    |||| ||||||    
T  47505912 gaggatttcct 47505902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 11197553 - 11197443
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||| ||||||| || |||||| ||||| || |||||||| |||||| | |||| ||||||| ||  ||||||| |||| | ||||||||||||||  ||    
T  11197553 ttgatacatttgatttggctgagacacacgagtaatttacctaaatgcctttcggcagttaactgtcgaattttgtggataccggctgcagttaactccc 11197454  T
Q  333 gaggttttcct 343  Q
    ||| |||||||    
T  11197453 gagattttcct 11197443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 38119527 - 38119637
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||| ||| | |||| ||||| || |||||||  |||||  |||| | ||||||| ||  ||||||| |||| | |||||||||||||| |||    
T  38119527 ttgacacatttagtttgactgagacacacgagtaatttatctaaataccctttggcagttaactgtcgaattttgtggataccggctgcagttaactacc 38119626  T
Q  333 gaggttttcct 343  Q
    |||||||||||    
T  38119627 gaggttttcct 38119637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 38127617 - 38127507
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    |||||||||||||||||| ||| ||||| || |||||||| ||||||||  | |  |||||| ||  ||||||| |||| | ||| |||||||||| |||    
T  38127617 ttgacacatttggttaggttgagacacacgagtaatttacctaaatgtctattggtagttaactgtcgaattttgtggataccggttgcagttaactacc 38127518  T
Q  333 gaggttttcct 343  Q
    || ||||||||    
T  38127517 gaagttttcct 38127507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 4208342 - 4208447
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaacc 332  Q
    ||||||||||||||| |  ||| | ||| || ||||||||| |||| ||||||| ||||||| ||| |||||||   | || ||||||||||||||  ||    
T  4208342 ttgacacatttggtttgattgagaaacacgagtaatttactcaaatatccttcggcagttaactgccgaattttgaaggaaccggctgcagttaactgcc 4208441  T
Q  333 gaggtt 338  Q
    ||||||    
T  4208442 gaggtt 4208447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 15696826 - 15696758
Alignment:
Q  265 taatttacttaaatgtccttcgacagttaattgctgaattttatggaaatcggctgcagttaacaaccgagg 336  Q
    ||||||||| ||||| |||||||||||||| ||| |||  |||||| || |||||||||||||| |||||||    
T  15696826 taatttactaaaatgcccttcgacagttaactgccgaa--ttatgg-aaccggctgcagttaactaccgagg 15696758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 51291657 - 51291610
Alignment:
Q  288 cagttaattgctgaattttatggaaatcggctgcagttaacaaccgagg 336  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  51291657 cagttaattgccgaattatatggaa-tcggctgcagttaactaccgagg 51291610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 19012 - 18951
Alignment:
Q  233 ttgacacatttggttaggctgaaacacatgaataatttacttaaatgtccttcgacagttaa 294  Q
    |||||||||||||||||||||| |||||  | |||||||| |||||| |||| | |||||||    
T  19012 ttgacacatttggttaggctgagacacactagtaatttacctaaatgccctttggcagttaa 18951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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