View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_low_23 (Length: 236)
Name: NF18296_low_23
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44523618 - 44523840
Alignment:
| Q |
1 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaac |
100 |
Q |
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| T |
44523618 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaac |
44523717 |
T |
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| Q |
101 |
gagaaccagattctatatttgtctatttatggatttgtttgtcaatctgttgtgaattcatgatc-agtattctccaaattgcagttaactttgattcct |
199 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
44523718 |
gagaaccagattctatatttgtctatttatggacttgtttgtcaatctgttgtgaattcatgatcaaatattctccaaattgcagttaactttgattcct |
44523817 |
T |
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| Q |
200 |
cactatttttctctgttttattt |
222 |
Q |
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|||||||||||| |||||||||| |
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| T |
44523818 |
cactatttttctttgttttattt |
44523840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5750899 - 5750678
Alignment:
| Q |
1 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcatttaaaac |
100 |
Q |
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| T |
5750899 |
ttttcgtttaacgaacaccattttcttgtcaataatttatggcatatgtaccatgtattaacatacaagccaaaattaacccacgctgttcatttaaaaa |
5750800 |
T |
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| Q |
101 |
gagaaccagattctatatttgtctatttatggatttgtttgtcaatctgttgtgaattcatgatcagtattctccaaattgcagttaactttgattcctc |
200 |
Q |
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| T |
5750799 |
gagaaccaaattccatatttgtctatttatggacttgtttgtcaatctgttgtgccttcatgatcaatattctccaaattgcggttaactttgattcctc |
5750700 |
T |
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| Q |
201 |
actatttttctctgttttattt |
222 |
Q |
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||||||||||| |||||||||| |
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| T |
5750699 |
actatttttctttgttttattt |
5750678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32555516 - 32555466
Alignment:
| Q |
1 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtac |
51 |
Q |
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| T |
32555516 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtac |
32555466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20353487 - 20353537
Alignment:
| Q |
1 |
tttttgtttaacaaacaccattttcttgtcaataatttatggcatatgtac |
51 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20353487 |
tttttgtttaacaaacaccattttcttgtcaatattttatggcatatgtac |
20353537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 38367824 - 38367759
Alignment:
| Q |
157 |
ttcatgatcagtattctccaaattgcagttaactttgattcctcactatttttctctgttttattt |
222 |
Q |
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|||||||||| |||||||||| ||||| |||| ||||||||||| || ||||||| |||||||||| |
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| T |
38367824 |
ttcatgatcaatattctccaatttgcatttaaatttgattcctcgctgtttttctttgttttattt |
38367759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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