View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_low_24 (Length: 235)
Name: NF18296_low_24
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30956787 - 30956566
Alignment:
| Q |
1 |
tttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtc |
100 |
Q |
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| T |
30956787 |
tttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtc |
30956688 |
T |
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| Q |
101 |
ctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatggaataaaataaatggtaacaattacggcagtttggaaccactgtgaaag |
200 |
Q |
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| T |
30956687 |
ctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatggaataaaataaatagtaacaattacggcagtttggaaccactgtgaaag |
30956588 |
T |
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| Q |
201 |
ccatgaacgaagtcaaaaactg |
222 |
Q |
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| T |
30956587 |
ccatgaacgaagtcaaaaactg |
30956566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 30946529 - 30946335
Alignment:
| Q |
23 |
ctgagcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtgg |
122 |
Q |
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|||||||||||||||| | |||||||||||||| ||||||||||| ||| |||| ||||||||||| ||||| |||||| ||||||||||| | ||||| |
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| T |
30946529 |
ctgagcaaattttggttttgtcatgacataggcactaaactcctaactggttgacatgattgaccttaaattgttgtccttatcttgctaccctaagtgg |
30946430 |
T |
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| Q |
123 |
caaaaatgaatacttcaaagaaaatcatggaataaaataaatggtaacaattacggcagtttggaaccactgtgaaagccatgaacgaagtcaaa |
217 |
Q |
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| T |
30946429 |
taaaaatgaatacttaaaagaaattatttcaataaaataaatggcaacaattatggcagtttggaaccgccgcgaatgccatgaccaaagtcaaa |
30946335 |
T |
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