View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_low_5 (Length: 460)
Name: NF18296_low_5
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 19270153 - 19270584
Alignment:
| Q |
20 |
cggcaaacgaccaatctctgccgtcatcgacctttctgacgaagaagatgacgatattaagatcatcaatttcattccaaaaaataccacttatggaaag |
119 |
Q |
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| T |
19270153 |
cggcaaacgaccaatctctgccgtcatcgacctttctgatgaagaagatgacgatattaagatcatcaatttcattccaaaaaataccccttatggaaag |
19270252 |
T |
|
| Q |
120 |
cgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatctgcacggacactaaaacattgaaggacgcta |
219 |
Q |
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| T |
19270253 |
cgtaaaagaaacaagtttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatctgcacggacactaaaacaatgaaggacgcta |
19270352 |
T |
|
| Q |
220 |
tttacatcagcggttgttctcatgcttattgctcggattgtgtggcatcatacataggttccaaacttgaagataacatcgttaatattcggtgtccttt |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270353 |
tttacatcagcggttgctctcatgcttattgctcggattgtgtggcatcatacataggttccaaacttgaagataacatcgttaatattcggtgtccttt |
19270452 |
T |
|
| Q |
320 |
tccaaagtgcaaaggttcgttggaagcggagttttgccgttttattctaccggctgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttc |
419 |
Q |
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| T |
19270453 |
tccaaagtgtaaaggttcgttggaagcggagttttgccgttttattctgcctgccgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttc |
19270552 |
T |
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| Q |
420 |
gatgtttcagaaaagttctactgtccctttgc |
451 |
Q |
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| T |
19270553 |
gatgtttcagaaaagttctactgtccctttgc |
19270584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 19314441 - 19314848
Alignment:
| Q |
20 |
cggcaaacgaccaatctctgccgtcatcgacctttctgacgaagaagatgacgatattaagatcatcaatttcattccaaaaaataccacttatggaaag |
119 |
Q |
| |
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| T |
19314441 |
cggcaagcgacccatctcatccgtcatcaacctttccgatgaagaagacgaagacgttaagatcatcagtttcattccgaaaactatcccttccacaaaa |
19314540 |
T |
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| Q |
120 |
cgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatctgcacggacactaaaacattgaaggacgcta |
219 |
Q |
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|||||||||||||| |||| ||||||||||||||||| |||| || ||| || |||||||| |||||||| || |||||||||||| ||||||| ||| |
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| T |
19314541 |
cgtaaaagaaacaacattgaaaaaggagagtcttcaaactcaaataacacccctttcgtttgtgaaatctgtactgacactaaaacaatgaaggatgctt |
19314640 |
T |
|
| Q |
220 |
tttacatcagcggttgttctcatgcttattgctcggattgtgtggcatcatacataggttccaaacttgaagataacatcgttaatattcggtgtccttt |
319 |
Q |
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| T |
19314641 |
tctacatcagcggttgttctcacgtatattgctctgattgcgtggccatgtacattggttccaagcttgaagaaaacatcgtcaaaattcagtgtccttt |
19314740 |
T |
|
| Q |
320 |
tccaaagtgcaaaggttcgttggaagcggagttttgccgttttattctaccggctgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttc |
419 |
Q |
| |
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|||| |||||||||||| ||||| ||||| |||||||||| |||||| ||||| |||||||||| || |||||| | | | | ||||||||| ||||| |
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| T |
19314741 |
tccagggtgcaaaggttccttggaggcggatttttgccgttctattcttccggccaaggtttttgaacggtggggtaaggcgctttgtgaggctttgttc |
19314840 |
T |
|
| Q |
420 |
gatgtttc |
427 |
Q |
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|||||||| |
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| T |
19314841 |
gatgtttc |
19314848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 75 - 448
Target Start/End: Original strand, 19260018 - 19260391
Alignment:
| Q |
75 |
attaagatcatcaatttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccat |
174 |
Q |
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||||| ||| |||| |||| ||| ||||||| | | ||| ||||| ||||| |||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
19260018 |
attaatatcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaattcaagtatcactccat |
19260117 |
T |
|
| Q |
175 |
tcgtttgcgaaatctgcacggacactaaaacattgaaggacgctatttacatcagcggttgttctcatgcttattgctcggattgtgtggcatcatacat |
274 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||| ||| | |||||||||||||| || || ||||||||||| |||||||||| | |||||| |
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| T |
19260118 |
tcgtttgcgaaatctgcacggacacgaaaacaatgaaggatgctttctacatcagcggttgctcccacgcttattgctccgattgtgtggtaaaatacat |
19260217 |
T |
|
| Q |
275 |
aggttccaaacttgaagataacatcgttaatattcggtgtccttttccaaagtgcaaaggttcgttggaagcggagttttgccgttttattctaccggct |
374 |
Q |
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||||||||||||||||||||| || ||||||| ||||||| | | | | ||| |||||| |||||| | ||||||||||| ||||| | | |
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| T |
19260218 |
caattccaaacttgaagataacattgtcaatattcagtgtcctgtactagattgcgaaggtttgttggatccacagttttgccgtcccattctttcagac |
19260317 |
T |
|
| Q |
375 |
gaggtttttgatcgctggggtcaagggttgtgtgaggctatgttcgatgtttcagaaaagttctactgtccctt |
448 |
Q |
| |
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||||||| |||||| ||||||| ||| ||||||||| ||||| | ||||| ||||||||||||| ||||| |
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| T |
19260318 |
gaggtttatgatcggtggggtctgctgttctgtgaggctttgttcaaagtttcgaaaaagttctactgcccctt |
19260391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 19291733 - 19291804
Alignment:
| Q |
269 |
atacataggttccaaacttgaagataacatcgttaatattcggtgtccttttccaaagtgcaaaggttcgtt |
340 |
Q |
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|||||| |||||||| |||||||||||||| || ||||||||||||||| || | ||||||| ||| ||||| |
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| T |
19291733 |
atacatcggttccaagcttgaagataacatggtcaatattcggtgtcctatttccaagtgcagaggctcgtt |
19291804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 13207197 - 13207028
Alignment:
| Q |
90 |
ttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatct |
189 |
Q |
| |
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|||||||| ||||||||| || | || | |||||||||||||| | || ||| |||||||||||||||||| || ||||| || ||||||||||||| |
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| T |
13207197 |
ttcattcccaaaaataccctttttcgataacgtaaaagaaacaacatcgaaaaaagagagtcttcaaattcaaataacactcagttggtttgcgaaatct |
13207098 |
T |
|
| Q |
190 |
gcacggacactaaaacattgaaggacgctatttacatcagcggttgttctcatgcttattgctcggattg |
259 |
Q |
| |
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|||| || ||||||| | ||||||| | | | ||||||||| |||| |||||||| |||||||| ||||| |
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| T |
13207097 |
gcaccgaaactaaaagaatgaaggatgttttctacatcagctgttgctctcatgcatattgctctgattg |
13207028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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