View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18296_low_8 (Length: 421)
Name: NF18296_low_8
Description: NF18296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18296_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 106 - 404
Target Start/End: Original strand, 43515743 - 43516041
Alignment:
| Q |
106 |
ggtgtatcaaaatcaggttcaccggcagccaagcgaataacaggaacaccagcttgaacaagagcggtggcttgatcggttatagcgacagttcttgaag |
205 |
Q |
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| T |
43515743 |
ggtgaatcaaaatcaggctcaccagccgccaagagaataactggaacgccagcttgaacaagagcggttgcttgatcggttatagccacagtccttgaag |
43515842 |
T |
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| Q |
206 |
gcttaacagcattgacacgtggactcaatgaaatatcaacttctaaatcatcattatcagaaacggtttttgacttcacagttattcttcctcttctgtt |
305 |
Q |
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| T |
43515843 |
gtttcacagcattgacacgtggactcaatgaaatatcaacttctaaatcatcattatcagaaacggtttttgacttcacagttattcttcctcttctgtt |
43515942 |
T |
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| Q |
306 |
ctgttccaccccaacaacatattttacggtcttgtgagggaaggtggaaaggtttgagcagaaagagacgtggagagattggtgagggaaagagattcc |
404 |
Q |
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| T |
43515943 |
ctggtccaccccaacaacatattttacggtcttgtgagggaaggtggaaaggtttgagcagaaagagacgtggagagattggtgagggaaagagattcc |
43516041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 38106246 - 38106476
Alignment:
| Q |
18 |
cctacattaccatacataaaagtcataaaactaaggccatgttcaaataaaaacaattccaatggaaattacctcggctataaccgcgggtgtatcaaaa |
117 |
Q |
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| T |
38106246 |
cctacattaccatacataaaagtcataaaactaaggccatgttcgaataaaaacaattccaatggaaattacctcggctataaccgcgggtgtatcaaaa |
38106345 |
T |
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| Q |
118 |
tcaggttcaccggcagccaagcgaataacaggaacaccagcttgaacaagagcggtggcttgatcggttatagcgacagttcttgaaggcttaacagcat |
217 |
Q |
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| T |
38106346 |
tcaggttcaccggcagccaagcgaataacaggaacgccagcttgaacgagagcggtggcttgatcagtaatagcgacagttcttgaaggcttaacagcat |
38106445 |
T |
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| Q |
218 |
tgacacgtggactcaatgaaatatcaacttc |
248 |
Q |
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| T |
38106446 |
tgacacgtggactcaatgaaatatcaacttc |
38106476 |
T |
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