View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_high_12 (Length: 343)
Name: NF18297_high_12
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 28504695 - 28504367
Alignment:
| Q |
1 |
atttactcaataaaatatcatataagaaataatttatcatcgagtattggctcaaattgtgcagaatgcagataatgcatcatnnnnnnntaattcgtag |
100 |
Q |
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| T |
28504695 |
atttactcaataaaatatcatataagaaataatttatcatcgagtattcgctcaaattgtgcagaatgcagattatgcatcataaaaaaatagttcgtag |
28504596 |
T |
|
| Q |
101 |
aatttataaaagactctatgttcaacattgaatgcatttggtacctcaagttatgttacttggcatgaaaaattgaatccatttggtacctcaggtgcaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
28504595 |
aatttataaaagactctatattcaacattgaatgcatttggtacctcaagttaggttacttggcatgaaaaactgaatacattgggtacctcaggtgcaa |
28504496 |
T |
|
| Q |
201 |
ttcctctgacatgaagtgcatctggtactttaataaggcgtcatctgttctcat--atatggaacctgtttaaagattcgtcatttgatctatatctcaa |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28504495 |
ttcctctgacatcaagtgcatctggtactttaataaggcgtcatctgttctcatatatatggaacctgtttaaagattcgtcatttgatctatatctcaa |
28504396 |
T |
|
| Q |
299 |
agtaaactaaagttctaataggttaaaga |
327 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28504395 |
agtaaactaaagttctaataggttaaaga |
28504367 |
T |
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