View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18297_high_19 (Length: 238)

Name: NF18297_high_19
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18297_high_19
NF18297_high_19
[»] chr7 (1 HSPs)
chr7 (12-221)||(44768166-44768362)
[»] chr3 (4 HSPs)
chr3 (12-91)||(10681882-10681962)
chr3 (13-91)||(10537193-10537272)
chr3 (12-93)||(8960979-8961060)
chr3 (12-93)||(3298829-3298909)
[»] chr4 (2 HSPs)
chr4 (12-93)||(1993471-1993552)
chr4 (12-93)||(9404742-9404823)
[»] chr8 (1 HSPs)
chr8 (12-93)||(44613856-44613937)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 44768166 - 44768362
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaacacaccccaaaaactaaa 111  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||             |||||||||    
T  44768166 acaaaggtgtcgtatatatgcggaacacatagcaaagttgaaacaccaaaatccgtatatatgaggaacctctgccca-------------aaaactaaa 44768252  T
Q  112 gcctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaacctgannnnnnnaaacctgcacagaacagcaataacagctccccact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||| |||||||||||||||||||||||||    
T  44768253 gcctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaaccagacccccccaaacctgcagagaacagcaataacagctccccact 44768352  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 10681882 - 10681962
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa 91  Q
    |||||||||||||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||||||| | ||||||    
T  10681882 acaaaggtgtcgtatatatgcggaacacctaacaaggtaggaacaccaaaaatccatatatatgaggaacctttacccaaa 10681962  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 10537193 - 10537272
Alignment:
Q  13 caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa 91  Q
    |||||||| |||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||| ||||| ||||||    
T  10537193 caaaggtgccgtatatatgcggaacacataacaaggtaggaacaccaaaaatccatatatatgaggagcctctacccaaa 10537272  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 8961060 - 8960979
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 93  Q
    ||||||||| || | ||||||||||||| || ||| || ||||||||||||||  |||||||| ||||||||| ||||||||    
T  8961060 acaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatctttatatatgcggaacctctacccaaaaa 8960979  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 3298909 - 3298829
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 93  Q
    ||||||||| || | ||||||||||||| || ||| || ||||||||||||| | |||||||| ||||||||| ||||||||    
T  3298909 acaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaat-cttatatatgtggaacctctacccaaaaa 3298829  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 1993552 - 1993471
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 93  Q
    ||||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| ||||||||    
T  1993552 acaaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgtggaacctctacccaaaaa 1993471  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 9404742 - 9404823
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 93  Q
    ||||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| ||||||||    
T  9404742 acaaaggtgccgaaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgcggaacctctacccaaaaa 9404823  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 44613937 - 44613856
Alignment:
Q  12 acaaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa 93  Q
    ||||||||| || | ||||||||||||| || ||| || |  |||||||||||| |||||||| ||||||||| ||||||||    
T  44613937 acaaaggtgccggaaatatgcggaacacctaacaatgtagtcacaccaaaatccttatatatgtggaacctctacccaaaaa 44613856  T

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