View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_high_20 (Length: 228)
Name: NF18297_high_20
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1940863 - 1941075
Alignment:
| Q |
1 |
atttgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatccactcctgcctgatttc |
100 |
Q |
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| T |
1940863 |
atttgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctagtgtctatagaatgcatccactcctgcctgatttc |
1940962 |
T |
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| Q |
101 |
ctgcacttgagagacacatctgcctctcctgggccaaacaaatctccgccattaatcaaagagtatgacaatatattatgatttttacatcatcataact |
200 |
Q |
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| T |
1940963 |
ctgcacttgagagacacatctgcctctcctgggcctaacaaatctccgccattaatcaaagagtatgacaatatattatgatttttacatcatcataact |
1941062 |
T |
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| Q |
201 |
attacgctctctg |
213 |
Q |
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||||||| ||||| |
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| T |
1941063 |
attacgccctctg |
1941075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 1955599 - 1955771
Alignment:
| Q |
5 |
gtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatccactcctgcctgatttcctgc |
104 |
Q |
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||||||||||| | | |||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||| ||||||| ||||||| ||| |
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| T |
1955599 |
gtgggcatgaaaaaaccagataatcatggtgttccatactctctaactgaagaatttgtgactgtctataggatgcatgcactcctacctgattctttgc |
1955698 |
T |
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| Q |
105 |
acttgagagacacatctgcctctcctgggccaaacaaatctccgccattaatcaaagagtatgacaatatatt |
177 |
Q |
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| T |
1955699 |
atttgagagacatatctgccaccccaggacaaaacaaatctccaccactgatcaaagagtatgccaaaatatt |
1955771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1926767 - 1926893
Alignment:
| Q |
1 |
atttgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctactgtctatagaatgcatccactcctgcctgatttc |
100 |
Q |
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||||||||| ||||||| | || ||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||| |||||| || ||| |
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| T |
1926767 |
atttgtgggtatgaagaaaccaaaaaatcatggtgttccatattctttaactgaggaatttgtgagtgtctataggatgcatcaactcctacccaattct |
1926866 |
T |
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| Q |
101 |
ctgcacttgagagacacatctgcctct |
127 |
Q |
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||||| ||||| |||| ||||| |||| |
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| T |
1926867 |
ctgcatttgagggacatatctgactct |
1926893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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