View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_1 (Length: 769)
Name: NF18297_low_1
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 282 - 769
Target Start/End: Complemental strand, 26185202 - 26184685
Alignment:
| Q |
282 |
tcagggtcgattttagcataaggtatagtccaaagactccaaacttttactaggtctatgnnnnnnnncatacttatgatgacaatttgtagaactttca |
381 |
Q |
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| T |
26185202 |
tcagggtcgattttagcataaggtatagtccaaagacaccaaacttttaccagatctatgaaaaaaa-catacttatgatgacaatttgtagaactttca |
26185104 |
T |
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| Q |
382 |
acacaatggtagccatcacttatttgttttagattaaaaat----------gtaataatttcactgaattattgatactagttttaaaaaagattgattc |
471 |
Q |
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| T |
26185103 |
acacaatggtagccatcacttatttgttttagattaaaaataattaaaaatgtaataatttcactgaaatattgatactagttttaaaaaagattgattc |
26185004 |
T |
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| Q |
472 |
taagttttttaataccnnnnnnnctactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
571 |
Q |
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| T |
26185003 |
taagttttttaataccaaaaaaattactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
26184904 |
T |
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| Q |
572 |
tacccctcattattggagtaggttctatcacaatcatttatttactttaactattttttcatctaaccaatcaacaatttaagatcata----------- |
660 |
Q |
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| T |
26184903 |
tacccctcattattggagtaggttctatcacaatcatttatttactttaactattttttcatctaaccaatcaacaatttaagatcataaacatatcaat |
26184804 |
T |
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| Q |
661 |
----------aacacatcgatcacctaacctgtgtttggattccacataaagtaggaaaaatgggatatcataaaaaccgggactgacacaaacctttac |
750 |
Q |
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| T |
26184803 |
attttggttaaacacatcgatcacctaacctgtgtttggattccacataatgtaggacatattggatatcatagtaaccgtgactgacacaatcttttac |
26184704 |
T |
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| Q |
751 |
tgcaactcacgtgcaagac |
769 |
Q |
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| T |
26184703 |
tgcaactcacgtgcaagac |
26184685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 26185422 - 26185232
Alignment:
| Q |
93 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
192 |
Q |
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| T |
26185422 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
26185323 |
T |
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| Q |
193 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaag-tataatttaaattggtcccattgaagcatacacgtccttatt |
282 |
Q |
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| T |
26185322 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaagttataatttaaattggtcccattgaagcatacacgtccttatt |
26185232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 26185471 - 26185415
Alignment:
| Q |
12 |
ataggtatccaaattagaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
68 |
Q |
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| T |
26185471 |
ataggtatccaaattaaaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
26185415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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