View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_12 (Length: 344)
Name: NF18297_low_12
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 8007490 - 8007313
Alignment:
| Q |
1 |
caagtagacaatgacagatgatgtttgtcgattttttctgattctcgtaggtgctcataatggacaaagttacggtgaaagttatgtcacattcatgtaa |
100 |
Q |
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| T |
8007490 |
caagtagacaatgacagatgatgtttgtcgattttttctgattctcgtaggtgctcataatggacaaagttacggtgaaagttatgtcacattcatgtaa |
8007391 |
T |
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| Q |
101 |
aatggcagatattacagaccaagaagtttcttgtaagaactctaaaaggatatggcttttctaagtttatttattttt |
178 |
Q |
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| T |
8007390 |
aatggcagatattacagaccaagaagtttcttgtaagaactctaaaaggatatgacttttctaagtttatttattttt |
8007313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 8007063 - 8006909
Alignment:
| Q |
180 |
tcattcattaacctgtattatcgtgttacacgtgatggtagttattcttatctttgaatattgaccataaatgagatgctttcttctgtttcctgttttt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8007063 |
tcattcattaacctgtattatcgtgttacacgtgatggtagttattcttgtctttgaatattgaccataaatgagatgctttcttctgtttcctgttttt |
8006964 |
T |
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| Q |
280 |
taacgtttacgcctgatatgcaatgagctaacttttctgcattacaagttctgtg |
334 |
Q |
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| T |
8006963 |
taacgtttacgcctgatatgcaatgagctaacttttctgcattacaagttctgtg |
8006909 |
T |
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