View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_14 (Length: 317)
Name: NF18297_low_14
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 29848701 - 29848994
Alignment:
| Q |
21 |
ggtcaaccattgaaaatctaaacataaattaaatgttttgttcagtgttcgacatatgttagtgaccggtgtgactacattatattat-----tctattt |
115 |
Q |
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| T |
29848701 |
ggtcaaccattgaaaatctaaacataaattaaatgttttgttcagtgttcgacatatattagtgaccagtctgactacattatattatattattctattt |
29848800 |
T |
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| Q |
116 |
tttaaatatcagtggtgtcaatttgttagtgtttggggtatgtgtcggtgtgtttgagttgtatagagagggga--caaactattaaaatgttgtggtgt |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
29848801 |
tttaaatattagtggtgtcaatttgttagtgtttggggtatgtgtcggtgtgtttgagttgtatagagagaggagacaaactattaaaatgttgtggtgt |
29848900 |
T |
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| Q |
214 |
acatgcatttggattattaggccattcctatgctattaattttgtctttcttagtatacaatgacaggtggaaatgggacatgtttgacctttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848901 |
acatgcatttggattattaggccattcctatgctattaattttgtctttcgtagtatacaatgacaggtggaaatgggacatgtttgacctttg |
29848994 |
T |
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