View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_17 (Length: 268)
Name: NF18297_low_17
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_17 |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 31274524 - 31274777
Alignment:
| Q |
18 |
gtagaaatttaccatccttcaacttgtggggggctaacacatgatgaaggaaaacaagagaataaggagtagttacagcagtaacg--------acgtta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| | |||| |
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| T |
31274524 |
gtagaaatttaccatccttcaacttgtggggggctaacacatcatgaaggaaaacaagagaatgaggagtagttacaacagtaacttgcgtagcaagtta |
31274623 |
T |
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| Q |
110 |
cctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgta |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
31274624 |
cctaactttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtatacctcttagcttctatataaattgta |
31274723 |
T |
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| Q |
210 |
ctccttcattatttcatcaattaatgagaatgttattcatctatttcttctctc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31274724 |
ctccttcattatttcatcaattaatgagaatgttattcatctatttcttctctc |
31274777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 20123616 - 20123772
Alignment:
| Q |
106 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
205 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||||| |
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| T |
20123616 |
gttatctagctttagttagttttcagttagttagaagagttctaatactctatgcttaagctcactgtaatatagtgcaccacttagcttctatataagt |
20123715 |
T |
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| Q |
206 |
tgtactccttcattatttcatcaattaatgagaatgttattcatctatttcttctctc |
263 |
Q |
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| T |
20123716 |
tttactccttcatta-ttcatcaattaatgagaatattattcatctatttcttctctc |
20123772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 39236065 - 39236213
Alignment:
| Q |
114 |
gctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtactcc |
213 |
Q |
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||||||||| ||| || |||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
39236065 |
gctttagttagttatcaattagttagaagagttctaatactctatgctacacctcattgtaatatagtacaccacttagcttctatataagttgtactcc |
39236164 |
T |
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| Q |
214 |
ttcattatttcatcaattaatgagaatgttattcatctatttcttctctc |
263 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236165 |
ttcatta-ttcatcaattaatgagaatgttattcatctatttcttctctc |
39236213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 23369899 - 23369659
Alignment:
| Q |
19 |
tagaaatttaccatccttcaacttgtggggggctaacacatgatgaaggaaaacaagagaataaggagtagttacagcagtaacgacgttacctagcttt |
118 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| || |||| || | || || |
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| T |
23369899 |
tagatatttaccatccttcaacttatggggggctaacacatcatgaagagaaacatgagaataaggagtagttactacaataacttgcgtaacaag--tt |
23369802 |
T |
|
| Q |
119 |
agtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtactccttcat |
218 |
Q |
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| | | || ||||||||||| |||||| |||||||||||||| | |||||||||| |||||||||| ||||| |||| |||||||||||||||||||| |
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| T |
23369801 |
atctagcttt-agttagttagatgagttctaatactctatgcttgacctcattgtaacatagtacaccacttagtttctatataagttgtactccttcat |
23369703 |
T |
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| Q |
219 |
tatttcatcaattaatgagaatgttattcatctatttcttctctc |
263 |
Q |
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|| |||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
23369702 |
ta-ttcatcaattaatgagaatgttcttcatctatcttttctctc |
23369659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 26215968 - 26216052
Alignment:
| Q |
106 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgt-aatatagtacacctct |
189 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26215968 |
gttacctagctttagttagtttctagttagttagaagagttctaatactctatgcttcagctcattgtaaatatagtacacctct |
26216052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 8736974 - 8736824
Alignment:
| Q |
111 |
ctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtac |
210 |
Q |
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|||||||||||| |||| |||||||||||||||||| | ||||||||| | ||||||||||| ||||||||| ||||| ||| ||||||||||| |
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| T |
8736974 |
ctagctttagttggttt-cagttagttagaagagttttactactctatgttatgcctcattgtaatgtagtacaccacttagaatctatataagttgtaa |
8736876 |
T |
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| Q |
211 |
tccttcattatttcatcaattaatgagaatgttattcatctatttcttctctc |
263 |
Q |
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|| | || | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8736875 |
tc-tacactcattcatcaattaatgagaatattattcatctatttcttctctc |
8736824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 1858 - 1756
Alignment:
| Q |
106 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
205 |
Q |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
1858 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
1760 |
T |
|
| Q |
206 |
tgta |
209 |
Q |
| |
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|||| |
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|
| T |
1759 |
tgta |
1756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 6105 - 6003
Alignment:
| Q |
106 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
205 |
Q |
| |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
6105 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
6007 |
T |
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| Q |
206 |
tgta |
209 |
Q |
| |
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|||| |
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|
| T |
6006 |
tgta |
6003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 21198102 - 21198000
Alignment:
| Q |
106 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
205 |
Q |
| |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
21198102 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
21198004 |
T |
|
| Q |
206 |
tgta |
209 |
Q |
| |
|
|||| |
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|
| T |
21198003 |
tgta |
21198000 |
T |
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