View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18297_low_20 (Length: 250)

Name: NF18297_low_20
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18297_low_20
NF18297_low_20
[»] chr8 (1 HSPs)
chr8 (171-250)||(42871480-42871559)
[»] chr7 (3 HSPs)
chr7 (195-246)||(43460249-43460300)
chr7 (206-250)||(41328903-41328947)
chr7 (203-250)||(39982006-39982053)
[»] chr2 (4 HSPs)
chr2 (195-246)||(32469838-32469889)
chr2 (206-250)||(28610662-28610706)
chr2 (203-250)||(4920435-4920482)
chr2 (203-250)||(45700227-45700274)
[»] chr6 (2 HSPs)
chr6 (206-250)||(11723472-11723516)
chr6 (171-245)||(3488856-3488929)
[»] chr4 (4 HSPs)
chr4 (206-250)||(26495695-26495739)
chr4 (206-250)||(1520479-1520523)
chr4 (206-250)||(8362826-8362870)
chr4 (201-246)||(31183414-31183459)
[»] chr3 (3 HSPs)
chr3 (206-250)||(13621458-13621502)
chr3 (206-250)||(49380387-49380431)
chr3 (195-250)||(54749762-54749817)
[»] chr1 (4 HSPs)
chr1 (195-250)||(5612462-5612517)
chr1 (195-250)||(26287069-26287124)
chr1 (206-250)||(14478950-14478994)
chr1 (206-238)||(51446294-51446326)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 42871559 - 42871480
Alignment:
Q  171 gcggtggccgtcggagcaaggtggtccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    ||||||| || |||||||| ||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  42871559 gcggtggtcgccggagcaaagtcatccgatcatagtttttctttgtgggttttgtagagaatatgaaggagagtatgttt 42871480  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 43460249 - 43460300
Alignment:
Q  195 tccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtat 246  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43460249 tccgatcatgatttttctttgtgggttttgtagagaatataaaggagagtat 43460300  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 41328947 - 41328903
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41328947 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 41328903  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 39982053 - 39982006
Alignment:
Q  203 tgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  39982053 tgatttttctttgtggattttgtagagaatatgaaggagagtatgttt 39982006  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 32469889 - 32469838
Alignment:
Q  195 tccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtat 246  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32469889 tccgatcatggtttttctttgtgggttttgtagagaatatgaaggagagtat 32469838  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 28610662 - 28610706
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  28610662 tttttctttgtgggttttgtagagaatatgaaggagaatatgttt 28610706  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 4920435 - 4920482
Alignment:
Q  203 tgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  4920435 tgatttttctttgtggattttgtagaggatatgaaggagagtatgttt 4920482  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 45700227 - 45700274
Alignment:
Q  203 tgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  45700227 tgatttttatttgtggattttgtagagaatatgaaggagagtatgttt 45700274  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 11723516 - 11723472
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11723516 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 11723472  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 3488856 - 3488929
Alignment:
Q  171 gcggtggccgtcggagcaaggtggtccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagta 245  Q
    ||||||| || |||||||||||  ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||    
T  3488856 gcggtggtcgccggagcaaggtcatccaaacatgatttttctt-gtgagttttgtagagaataagaaggagagta 3488929  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 26495695 - 26495739
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26495695 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 26495739  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 1520523 - 1520479
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  1520523 tttttctttgtgggttttgtagaaaatatgaaggagagtatgttt 1520479  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 8362870 - 8362826
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  8362870 tttttctttttgggttttgtagagaatatgaatgagagtatgttt 8362826  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 31183414 - 31183459
Alignment:
Q  201 catgatttttctttgtgggttttgtagagaatatgaaggagagtat 246  Q
    ||||||||||||| |||| |||||||| ||||| ||||||||||||    
T  31183414 catgatttttcttggtggattttgtagggaatacgaaggagagtat 31183459  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 13621502 - 13621458
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13621502 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 13621458  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 49380431 - 49380387
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  49380431 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 49380387  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 54749817 - 54749762
Alignment:
Q  195 tccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  54749817 tccgatcattgtttttctttgtgggttttgtagaaaatatgaaggagagtatgttt 54749762  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 5612462 - 5612517
Alignment:
Q  195 tccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  5612462 tccgatcattgtttttctttgtgggttttgtagaaaatatgaaggagagtatgttt 5612517  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 26287124 - 26287069
Alignment:
Q  195 tccgatcatgatttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  26287124 tccgatcattgtttttctttgtgggttttgtagaaaatatgaaggagagtatgttt 26287069  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 14478994 - 14478950
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaaggagagtatgttt 250  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  14478994 tttttctttgtggattttgtagagaatatgaaggagagtatgttt 14478950  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 51446326 - 51446294
Alignment:
Q  206 tttttctttgtgggttttgtagagaatatgaag 238  Q
    ||||||||||||| |||||||||||||||||||    
T  51446326 tttttctttgtggattttgtagagaatatgaag 51446294  T

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