View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_4 (Length: 537)
Name: NF18297_low_4
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 8007973 - 8007467
Alignment:
| Q |
17 |
aagctatacatcagagcttttaaaaattagggtaaatagttctaaacttacgatggcagttgcccaacgatcaaccaaacccacgcgtagttaaaaatag |
116 |
Q |
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| T |
8007973 |
aagctatacatcagagcttttaaaaattagggtaaatagttctaaacttacgatggcagttgcccaacgatcaaccaaacccacgcgtagttaaaaatag |
8007874 |
T |
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| Q |
117 |
aagacaaaatccaattaaggatgccattttggcgtttttggttgttgtattgcactaatacttatgtataagttacttttacagtggaaggaatgaagga |
216 |
Q |
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| T |
8007873 |
aagacaaaatccaattaaggatgccattttggcttttctggttgttgtattgcactaatacttatgtataagttgcttttacagtggaaggaatgaagga |
8007774 |
T |
|
| Q |
217 |
atggccgcaaataagtaatgtataatctattatggtaaacttatgaaattaagctgaaaagagcttatagacatgatttatcttcataagcacttctaaa |
316 |
Q |
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| T |
8007773 |
atggccgcaaataagtaatgtataatctattatggtaaacttatgaaattaagctgaaaagagcttatagacatgatttatcttcataagcacttctaaa |
8007674 |
T |
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| Q |
317 |
tgcatgcattgctttcacctttttgacttgtttactaatttgttcatggttgtatgttcataggattattatatgaaatgcttagatcagcaaaatcggg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8007673 |
tgcatgcattgctttcacctttttgacttgtttactaatttgttcatggttgtatgttcataggattattatatgaaatgcttaggtcagcaaaatcggg |
8007574 |
T |
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| Q |
417 |
ggattcgaaagcatggaaggtgtggatttagtatggatgttttgcacttctcatatacctttgtatctcatctttagttcattcaagtagacaatgacag |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8007573 |
ggattcgaaagcatggaaggtgtggatttagtatggatgttttgcacttctcatatacctttgtatctcatctttagttcattcaagtagacaatgacag |
8007474 |
T |
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| Q |
517 |
atgatgt |
523 |
Q |
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| T |
8007473 |
atgatgt |
8007467 |
T |
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