View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_5 (Length: 498)
Name: NF18297_low_5
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 244 - 482
Target Start/End: Original strand, 53671918 - 53672156
Alignment:
| Q |
244 |
acctgaatgcttggatatgaattaaattacttattactcagatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
343 |
Q |
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| T |
53671918 |
acctgaatgcttggatatgaattaaattacttattactc-gatataaattagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgt |
53672016 |
T |
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| Q |
344 |
tgcaattgtgttgttttaatatatcatcttctggc--tttttcatataaaaaagaaaatctatcttaaccatccatccattgtgaagattaattgttctc |
441 |
Q |
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| T |
53672017 |
tgcaattgtgttgttttaatatatcatcttctggccttttttcatataaaaaagaaaat-aatcttaaccatccatccattgtgaagattaattgttctc |
53672115 |
T |
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| Q |
442 |
atgctttcatattctaacattctcatatgttattaagttac |
482 |
Q |
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| T |
53672116 |
atgctttcatattctaacattctcatatgttattaagttac |
53672156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 53671719 - 53671907
Alignment:
| Q |
1 |
aacatcaattcaatgttttcgacgaccttgaaaaataacactgatcataaaccttggtgacaatgatttgcagcattggaaatattttcacagctgaagc |
100 |
Q |
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| T |
53671719 |
aacatcaattcaatgttttctacgaccttgaaaaataacactgatcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaagc |
53671818 |
T |
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| Q |
101 |
cctatagcaaaggttgatgcttttattctgaatggtgaacctgaatgagaactgtgattatcttaacttggaatttctcttaatcttag |
189 |
Q |
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| T |
53671819 |
actatagcaaaggttgatgcttttattcagaatggtgaacctgaatgagaactgtgattatcttaacttggaatttctcttaatcttag |
53671907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 53674335 - 53674381
Alignment:
| Q |
174 |
tttctcttaatcttaggaccagattaaggtgtatatgtcatgcttga |
220 |
Q |
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| T |
53674335 |
tttctcttaatcttaggaccagatgaaggtgtatatgtcaagcttga |
53674381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 28957328 - 28957371
Alignment:
| Q |
274 |
ttattactcagatataaattagcacacttgctaaaattgtatca |
317 |
Q |
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| T |
28957328 |
ttattacttcgatataaattagtacacttgctaaaattgtatca |
28957371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 6374789 - 6374834
Alignment:
| Q |
274 |
ttattactcagatataaattagcacacttgctaaaattgtatcaat |
319 |
Q |
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| T |
6374789 |
ttattacttcgatataaattagtatacttgctaaaattgtatcaat |
6374834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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