View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18297_low_7 (Length: 424)
Name: NF18297_low_7
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 54036658 - 54036879
Alignment:
| Q |
18 |
gtataggagttcataattacaacaacttcattgatattttggttcaagtgtctaggtttgatcgaactctattgtttggaaatagctctttagaaagcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54036658 |
gtataggagttcataattacaacaacttcattgatattttggttcaagtgtctaggtttgatcgaactctattgtttggaaatagctctttagaaagcaa |
54036757 |
T |
|
| Q |
118 |
catttggcttctaatcgtcttgtatgttgctcaggctgaggttgtattgtttgattgatatttataactttgaggtaagtagtgttggtccctcctattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
54036758 |
catttggcttctaatcgtcttgtatgttgctcaggctgagcttgtattgtttgattgatatttataactttgaggcaagtagtgttggtccctcctgttt |
54036857 |
T |
|
| Q |
218 |
cattttaactgattggactcta |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54036858 |
cattttaactgattggactcta |
54036879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 54036920 - 54037062
Alignment:
| Q |
282 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54036920 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctctgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
54037019 |
T |
|
| Q |
382 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagtt |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54037020 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagtt |
54037062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 420
Target Start/End: Complemental strand, 1080384 - 1080272
Alignment:
| Q |
305 |
aaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtttgagcaaaataacaaaaaccatg |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||||||| | |||||||||||||||| ||||| | |
|
|
| T |
1080384 |
aaaaatgttaattgactgctctctctctgt---tactgttatgatggccacattactgccttgagtggacatgcgattgagcaaaataacaagaaccaag |
1080288 |
T |
|
| Q |
405 |
aagaagaacaacaaaa |
420 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1080287 |
aagaagaacaacaaaa |
1080272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University