View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18297_low_8 (Length: 408)

Name: NF18297_low_8
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18297_low_8
NF18297_low_8
[»] chr2 (5 HSPs)
chr2 (25-398)||(16907680-16908053)
chr2 (95-165)||(41501073-41501143)
chr2 (39-162)||(17560787-17560909)
chr2 (34-146)||(40800163-40800273)
chr2 (103-146)||(13779107-13779150)
[»] chr3 (4 HSPs)
chr3 (50-165)||(5528333-5528446)
chr3 (95-165)||(27158293-27158363)
chr3 (104-162)||(25410420-25410477)
chr3 (95-151)||(35314124-35314180)
[»] chr4 (2 HSPs)
chr4 (37-146)||(53402530-53402637)
chr4 (95-161)||(43543295-43543361)
[»] chr1 (1 HSPs)
chr1 (95-165)||(39003175-39003245)
[»] chr6 (3 HSPs)
chr6 (95-165)||(11714193-11714263)
chr6 (95-162)||(7810151-7810216)
chr6 (100-146)||(33189502-33189548)
[»] chr5 (1 HSPs)
chr5 (113-162)||(34443309-34443358)
[»] chr7 (3 HSPs)
chr7 (95-159)||(34889947-34890011)
chr7 (100-151)||(26562952-26563003)
chr7 (95-152)||(12163687-12163744)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 25 - 398
Target Start/End: Complemental strand, 16908053 - 16907680
Alignment:
Q  25 ccccgcctgccacatttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacac 124  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16908053 ccccgcctgccacatttcacggaatctgttagcgcctccttcttctataataaaggtgattatgcgtcacccataaacgtacgattcatttcccgcacac 16907954  T
Q  125 ttttacacattcaacctcattttctacaatgacttgagtgtcgcatgcacccttggttccaccgtgaagaacgcactgccaccgtaccagaacaccgcac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16907953 ttttacacattcaacctcattttctacaatgacttgagtgtcgcatgcacccttggttccaccgtgaagaacgcactgccaccataccagaacaccgcac 16907854  T
Q  225 tgccaccgttgctttcattcgtcgttaccggacatatctagtttcataaatagacgaaagattaatctctacaattagagaccgaagatacccctttaca 324  Q
    | |||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  16907853 taccaccgttgcattgatctgtcgttaccggacatatctagtttcataaatagacgaaagattaatctccacaattagagaccgaaggtacccctttaca 16907754  T
Q  325 ctnnnnnnntatcttagcacacggtgggtaaatttacacaaaaacaactaagaaaagtcaaaccatctattcat 398  Q
    ||       |||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16907753 ctaaaaaaatatcctagcacatggtgagtaaatttacgcaaaaacaactaagaaaagtcaaaccatctattcat 16907680  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 41501073 - 41501143
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 165  Q
    |||| ||||||||||||||||||| |||  ||||||||||| |||||||||| ||||| ||||||||||||    
T  41501073 ccctcaaggtacgattcatttcccacacttttttacacattaaacctcatttcctacactgacttgagtgt 41501143  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 17560909 - 17560787
Alignment:
Q  39 tttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttc-ccgcacacttttacacattca 137  Q
    ||||| |||||  |||||||| ||||||| ||||| ||| ||||||| |||||||||| | ||||||| ||||||||  || |||| | |||||||||||    
T  17560909 tttcatggaatttgttagcgcctccttctcctata-taagggtgattctgcgtcaccc-tcaaggtacaattcatttttccacacattcttacacattca 17560812  T
Q  138 acctcattttctacaatgacttgag 162  Q
    ||||||||| ||||| |||||||||    
T  17560811 acctcatttcctacactgacttgag 17560787  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 40800273 - 40800163
Alignment:
Q  34 ccacatttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacaca 133  Q
    |||||||||| ||||  |||||||   ||||||| ||||| ||| |||||||  ||||||||| | ||||||||||||||||||  ||||||||||||||    
T  40800273 ccacatttcacggaagtcgttagcatctccttctcctata-taagggtgatttcgcgtcaccc-tcaaggtacgattcatttcctccacacttttacaca 40800176  T
Q  134 ttcaacctcattt 146  Q
     ||||| ||||||    
T  40800175 atcaacatcattt 40800163  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 13779107 - 13779150
Alignment:
Q  103 gtacgattcatttcccgcacacttttacacattcaacctcattt 146  Q
    |||| ||||||||||| || ||||||||||||||||||||||||    
T  13779107 gtacaattcatttcccacaaacttttacacattcaacctcattt 13779150  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 5528333 - 5528446
Alignment:
Q  50 ccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttct 149  Q
    ||||| |||| ||||||| ||||| ||| ||||||| |||||||||| | ||||||||||| ||||| | ||||||||||||||||||||||||||| ||    
T  5528333 ccgttggcgcctccttctcctata-taagggtgattctgcgtcaccc-tcaaggtacgatttatttctcacacacttttacacattcaacctcatttcct 5528430  T
Q  150 acaatgacttgagtgt 165  Q
    ||  ||||||| ||||    
T  5528431 actctgacttgggtgt 5528446  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 27158363 - 27158293
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 165  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||  |||| |||||| |||||    
T  27158363 ccctcaaggtacaattcatttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgt 27158293  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 25410420 - 25410477
Alignment:
Q  104 tacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgag 162  Q
    ||||||||||||||| || | |||||||||||||| ||||||| ||||| |||||||||    
T  25410420 tacgattcatttcccacata-ttttacacattcaatctcatttcctacactgacttgag 25410477  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 35314124 - 35314180
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctac 151  Q
    |||| ||||||||||||||||||| |||| ||||  |||||||| ||||||| ||||    
T  35314124 ccctcaaggtacgattcatttcccacacatttttgtacattcaatctcatttcctac 35314180  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 53402637 - 53402530
Alignment:
Q  37 catttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacacattc 136  Q
    ||||||| ||||  ||||||||| || |||| ||||| ||| |||||||  ||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  53402637 catttcacggaagacgttagcgcctcattctcctata-taagggtgatttcgcgtcaccc-tcaaggtacgattcatttcccacacacttttacacattc 53402540  T
Q  137 aacctcattt 146  Q
    | ||||||||    
T  53402539 atcctcattt 53402530  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 43543295 - 43543361
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttga 161  Q
    |||| ||| ||| ||||||||||| |||||| |||| ||| ||||||||||||||||| ||| ||||    
T  43543295 ccctcaagatacaattcatttcccacacactcttacgcatacaacctcattttctacactgatttga 43543361  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 39003245 - 39003175
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 165  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  39003245 ccctcaaggtacgattaatttcccacacacttttacacattcaacttcatttcctacactgatttgagtgt 39003175  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 11714263 - 11714193
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 165  Q
    |||| ||||||| |||||||||||  ||| |||||||||||||||||||||| |||||  |||||||||||    
T  11714263 ccctcaaggtacaattcatttcccatacatttttacacattcaacctcatttcctacacagacttgagtgt 11714193  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 7810151 - 7810216
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgag 162  Q
    |||| |||||| ||||||||||  ||||||||||||||||||||| ||||||| |||| ||| |||||    
T  7810151 ccctgaaggtatgattcatttc--gcacacttttacacattcaacttcattttatacattgatttgag 7810216  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 33189548 - 33189502
Alignment:
Q  100 aaggtacgattcatttcccgcacacttttacacattcaacctcattt 146  Q
    ||||||||||||||||||| |||||||||||||| | || |||||||    
T  33189548 aaggtacgattcatttcccacacacttttacacactaaatctcattt 33189502  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 34443358 - 34443309
Alignment:
Q  113 tttcccgcacacttttacacattcaacctcattttctacaatgacttgag 162  Q
    |||||| |||||||||||||||||||| |||||| ||||| |||||||||    
T  34443358 tttcccacacacttttacacattcaacttcatttcctacactgacttgag 34443309  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 34890011 - 34889947
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgactt 159  Q
    |||| |||||| ||||| |||||| ||| ||| ||||||||||||||||||| ||||| ||||||    
T  34890011 ccctcaaggtatgattcttttcccacacgcttgtacacattcaacctcatttcctacactgactt 34889947  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 26563003 - 26562952
Alignment:
Q  100 aaggtacgattcatttcccgcacacttttacacattcaacctcattttctac 151  Q
    ||||||||||| ||||||  |||||||||||||||| |||||||||| ||||    
T  26563003 aaggtacgatttatttcctacacacttttacacatttaacctcatttcctac 26562952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 12163687 - 12163744
Alignment:
Q  95 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctaca 152  Q
    |||| ||| ||||||||||||||| || | |||||||||||||||| ||||| |||||    
T  12163687 ccctcaagttacgattcatttcccacataattttacacattcaaccccatttcctaca 12163744  T

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