View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18297_low_9 (Length: 401)
Name: NF18297_low_9
Description: NF18297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18297_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 880358 - 880716
Alignment:
| Q |
14 |
aacctgtgattcttcatttttctatatttatgtgatttttatcagggtaatgttgatggataaacaaattttattgaacaannnnnnnn-accttaaatt |
112 |
Q |
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| T |
880358 |
aacccgtgattcttcatttttctatatttatgtgatttttgtcagggtaatgttgatggataaacaaattttgttgaacaatttttttttaccttaaatt |
880457 |
T |
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| Q |
113 |
tatccactcactcatctacatttactcttcatttgagttgttatatcatctgaaaacttgcatattataaaaagttaaaaatagttttaaaatttgtgta |
212 |
Q |
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| T |
880458 |
tatccactcactcatctacatttgctattcatttgagttgttatatcatttgaaa-cttgcatattataaaaagttaaaaatagttttaaaatttgtgta |
880556 |
T |
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| Q |
213 |
ttttatattaagtgtatgattttataataaatataataaatagttgttgttttccataaaaa-tatcatatttagctgtcttaacctatgcaatgttaca |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
880557 |
ttttatattatgtgtatgattttataataaatataataaatagttgttgttttcaataaaaattatcatatttagctgtcttaacctatgcaatgttgca |
880656 |
T |
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| Q |
312 |
tagaatagacaaaatgtaaatatgaagtaattgacaaaataaaattataattcaaacata |
371 |
Q |
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| T |
880657 |
taagatagacaaaatgtaaatatgaagtaattcacaaaataaaattataattgaaacata |
880716 |
T |
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