View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18298_high_4 (Length: 326)
Name: NF18298_high_4
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18298_high_4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 42151 - 41944
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
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| T |
42151 |
ttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttatgttatattactttattagat |
42052 |
T |
|
| Q |
101 |
tctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaattc |
200 |
Q |
| |
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|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |
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|
| T |
42051 |
tctatgatcgattatttccttcattctttatggttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattc |
41952 |
T |
|
| Q |
201 |
tgctaatt |
208 |
Q |
| |
|
|||||||| |
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|
| T |
41951 |
tgctaatt |
41944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35481 - 35274
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||||| || |
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|
| T |
35481 |
ttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttatgttatattactttattatat |
35382 |
T |
|
| Q |
101 |
tctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaattc |
200 |
Q |
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|||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||| |
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| T |
35381 |
tctatgatcgattatttccttcattctttatggttaaatctgcaatttctgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattc |
35282 |
T |
|
| Q |
201 |
tgctaatt |
208 |
Q |
| |
|
|||||||| |
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|
| T |
35281 |
tgctaatt |
35274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 27445207 - 27445414
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
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| T |
27445207 |
ttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttatgttatattactttattagat |
27445306 |
T |
|
| Q |
101 |
tctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaattc |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |
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|
| T |
27445307 |
tctatgatcgattatttccttcattctttatggttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattc |
27445406 |
T |
|
| Q |
201 |
tgctaatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
27445407 |
tgctaatt |
27445414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 20909788 - 20909590
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| ||| | ||| | |||| |||||||||| |||||| | |||||||||||||||||||||| | || |
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|
| T |
20909788 |
ttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgtttattgttatgttatattactttatcatat |
20909689 |
T |
|
| Q |
101 |
tctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaatt |
199 |
Q |
| |
|
|||||||| |||| ||||||| | | | ||| || |||||||| || ||| ||||| |||||||||| ||||| || |||||||||| ||||||||||| |
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|
| T |
20909688 |
tctatgattaattattttccttatatatgtatagtaaaatctgc-atctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatt |
20909590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 20924236 - 20924038
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| ||| | ||| | |||| |||||||||| |||||| | |||||||||||||||||||||| | || |
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|
| T |
20924236 |
ttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgtttattgttatgttatattactttatcatat |
20924137 |
T |
|
| Q |
101 |
tctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaatt |
199 |
Q |
| |
|
|||||||| |||| ||||||| | | | ||| || |||||||| || ||| ||||| |||||||||| ||||| || |||||||||| ||||||||||| |
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|
| T |
20924136 |
tctatgattaattattttccttatatatgtatagtaaaatctgc-atctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatt |
20924038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 37618559 - 37618447
Alignment:
| Q |
207 |
ttcaccaggttctctggattcgtagtggttcatcgctgtaatcagattcctcctctgtgcacatctgtatttggttaaggattatttgggctatgtgtgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37618559 |
ttcaccaggttctctggattcgtagtggtacatcgctgtaatcaggttcctcg---gtgcacatctgtgtttggttaaggattatttgggctatgtgtgt |
37618463 |
T |
|
| Q |
307 |
tttggtctgtgctgct |
322 |
Q |
| |
|
||| || |||| |||| |
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|
| T |
37618462 |
ttttgtgtgtgttgct |
37618447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 42312902 - 42312704
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||| ||| ||||| | |||| |||||||||| |||||| ||||||| |||||||||||||| | || |
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|
| T |
42312902 |
ttagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgttcattgttattttatattactttatcatat |
42312803 |
T |
|
| Q |
101 |
tctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaatt |
199 |
Q |
| |
|
|||||||| |||| ||||||| | | | ||| ||||||||||| || ||| ||||| |||||||||| |||| || |||||||||| ||||||||||| |
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|
| T |
42312802 |
tctatgattaattattttccttatatatgtatagttaaatctgc-atctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatt |
42312704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41326682 - 41326488
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttatgttatattactttattagat |
100 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| ||| ||| ||||| | |||| |||||||||| |||||| | |||||||||||||||||||||| | || |
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|
| T |
41326682 |
ttagaatcaagttttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgtttattgttatgttatattactttatcatat |
41326583 |
T |
|
| Q |
101 |
tctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaataagaatt |
199 |
Q |
| |
|
|||||||| |||| ||||||| | | | ||| | |||||||| || ||| ||||| |||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
41326582 |
tctatgattaattattttccttatatatgtatag-aaaatctgc-atctttatttgatgattccaaaacatcatt---gctcctatgcacaataagaatt |
41326488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11504564 - 11504770
Alignment:
| Q |
1 |
ttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtg--------tctgttgttatgttatattactt |
92 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| ||||| | |||| |||||||||| ||| | | | ||||||||||| ||||||| |
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|
| T |
11504564 |
ttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaagacgtctcacttgatgccactgcgtttattgttttattgttatgttagattactt |
11504663 |
T |
|
| Q |
93 |
tattagattctatgatggattatttccttct-ttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgctcctatgcgcaa |
191 |
Q |
| |
|
||| | ||||| |||| ||||||||||| | || ||||| |||||||||||||| | | ||||| ||||| |||| || || || ||||||||| ||| |
|
|
| T |
11504664 |
tatcatattct-tgattaattatttccttatattttttatagttaaatctgcaatctgtttttgatgattctaaaacattatgtttactcctatgcacaa |
11504762 |
T |
|
| Q |
192 |
taagaatt |
199 |
Q |
| |
|
|||||||| |
|
|
| T |
11504763 |
taagaatt |
11504770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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