View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18298_high_5 (Length: 303)

Name: NF18298_high_5
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18298_high_5
NF18298_high_5
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-282)||(35683-35947)
scaffold0003 (77-282)||(42354-42559)
[»] chr3 (3 HSPs)
chr3 (77-273)||(31688537-31688733)
chr3 (77-273)||(31911843-31912039)
chr3 (77-273)||(31945491-31945687)
[»] chr6 (3 HSPs)
chr6 (77-282)||(27444802-27445004)
chr6 (161-280)||(20909984-20910105)
chr6 (161-280)||(20924432-20924553)
[»] chr2 (2 HSPs)
chr2 (18-102)||(32280001-32280085)
chr2 (49-280)||(7828430-7828661)
[»] chr7 (2 HSPs)
chr7 (65-126)||(18940204-18940264)
chr7 (172-280)||(18940049-18940159)
[»] chr8 (2 HSPs)
chr8 (210-280)||(43226999-43227069)
chr8 (161-280)||(42313101-42313221)
[»] chr1 (1 HSPs)
chr1 (161-280)||(41326877-41326997)


Alignment Details
Target: scaffold0003 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 35947 - 35683
Alignment:
Q  18 aaatctgagtttttctttgacaagaaatgctactatttgttgaagagtcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatt 117  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35947 aaatctgggtttttctttggcaagaaatgctactatttggtgaagaatcaaaatatagcaattgggttttcaaggtactatagttttgaaccaatcaatt 35848  T
Q  118 tgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatat 217  Q
    ||||||||||||||||||||||                     |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  35847 tgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaatagttgaagaatttaacggggttgtgagtttttgttttatat 35748  T
Q  218 aatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactctctatttccc 282  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  35747 aatttctaatatgcgattatgtcttttttgcatgtttcttcatgatgtttaactctgtatttccc 35683  T

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Target: scaffold0003; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 42559 - 42354
Alignment:
Q  77 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaat 176  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||    
T  42559 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 42460  T
Q  177 agttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactctcta 276  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||    
T  42459 agttgaagaacttaacggggttgtgagtttttgttttatataatttctaatatgcgattatgtcttttttgcatgttttttcatgatgtttaactctgta 42360  T
Q  277 tttccc 282  Q
    ||||||    
T  42359 tttccc 42354  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 31688537 - 31688733
Alignment:
Q  77 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaat 176  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||    
T  31688537 aattgggttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31688636  T
Q  177 agttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactct 273  Q
    ||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31688637 agttgaagaacttaatggggttgtgagtttttattttatataatttctaatatgcgattatgtcttttttgcatgtttgttcatgatgtttaactct 31688733  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 31912039 - 31911843
Alignment:
Q  77 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaat 176  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||    
T  31912039 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31911940  T
Q  177 agttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactct 273  Q
    ||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31911939 agttgaagaacttaatggggttgtgagtttttattttatataatttctaatatgcgattatgtcttttttgcatgtttgttcatgatgtttaactct 31911843  T

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Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 31945687 - 31945491
Alignment:
Q  77 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaat 176  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||    
T  31945687 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat 31945588  T
Q  177 agttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactct 273  Q
    ||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31945587 agttgaagaacttaatggggttgtgagtttttattttatataatttctaatatgcgattatgtcttttttgcatgtttgttcatgatgtttaactct 31945491  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 27444802 - 27445004
Alignment:
Q  77 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnnnnnnnnnnnnnnagctttagttcaaaat 176  Q
    |||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||                     ||||| ||||||||||    
T  27444802 aattgggttttcaaggt---gtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagcttcagttcaaaat 27444898  T
Q  177 agttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactctcta 276  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  27444899 agttgaagaacttaacggggttgtgagtttttgttttatataatttctaatatgcgattatgtcttttttgcatgtttgttcatgatgtttaactctgta 27444998  T
Q  277 tttccc 282  Q
    ||||||    
T  27444999 tttccc 27445004  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 20910105 - 20909984
Alignment:
Q  161 agctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgt--ttgttc 258  Q
    |||||| ||| ||||| ||||||||||| |||  |  | ||||||| ||| ||||||||||||| | ||| ||| | || ||||||| || |  ||||||    
T  20910105 agctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatttgttc 20910006  T
Q  259 atgatgtttaactctctatttc 280  Q
    ||||||||||||||| ||||||    
T  20910005 atgatgtttaactctgtatttc 20909984  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 20924553 - 20924432
Alignment:
Q  161 agctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttttgcgtgt--ttgttc 258  Q
    |||||| ||| ||||| ||||||||||| |||  |  | ||||||| ||| ||||||||||||| | ||| ||| | || ||||||| || |  ||||||    
T  20924553 agctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatttgttc 20924454  T
Q  259 atgatgtttaactctctatttc 280  Q
    ||||||||||||||| ||||||    
T  20924453 atgatgtttaactctgtatttc 20924432  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 32280001 - 32280085
Alignment:
Q  18 aaatctgagtttttctttgacaagaaatgctactatttgttgaagagtcaaaatatagcaattgggttttcaaggtactggagtt 102  Q
    ||||||||| ||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  32280001 aaatctgagcttttctttggcaagaaatgctactacttggtgaagaatcaaaatatagcaattgggttttcaaggtagtggagtt 32280085  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 7828661 - 7828430
Alignment:
Q  49 actatttgttgaagagtcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaannnnnnnnn 148  Q
    |||||||| || ||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||   |||| |||||             
T  7828661 actatttggtgtagaatcaaaatagagcaattgggttttcaag-tactgcagttttgaaccaatcaatttgctcgattgggcatt-gttaatttttgttt 7828564  T
Q  149 nnnnnnnnnnnnagctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtctttttt-- 246  Q
                |||||| ||| ||||||||||||||||| ||||||  | ||||||| ||||||||||||||||||  ||| ||  |||| ||||||      
T  7828563 tgaaaagtctttagctttggttaaaaatagttgaagaactaaacggggctgtgagtttctgttttatataatttctagcatgggaagatgtattttttgg 7828464  T
Q  247 gcgtgtttgttcatgatgtttaactctctatttc 280  Q
    | ||||||||||||||||||||||||| ||||||    
T  7828463 gtgtgtttgttcatgatgtttaactctgtatttc 7828430  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 18940264 - 18940204
Alignment:
Q  65 tcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatttgctcgatt 126  Q
    |||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  18940264 tcaaaatagagcaattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgatt 18940204  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 18940159 - 18940049
Alignment:
Q  172 aaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtctttt--ttgcgtgtttgttcatgatgtttaa 269  Q
    ||||||||||||||| | ||| || || ||||||| ||||||||||||||||||  ||| |||||| | ||||  | | |||||| ||||||||||| |     
T  18940159 aaaatagttgaagaattaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttcatgatgttaag 18940060  T
Q  270 ctctctatttc 280  Q
    |||| ||||||    
T  18940059 ctctgtatttc 18940049  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 43226999 - 43227069
Alignment:
Q  210 ttttatataatttctaatatgcgattatgtcttttttgcgtgtttgttcatgatgtttaactctctatttc 280  Q
    ||||||||||||||||||||| ||| ||||||| |||| ||||||  |||||||| |||||| | ||||||    
T  43226999 ttttatataatttctaatatgagatgatgtcttctttgtgtgtttaatcatgatgcttaactgtgtatttc 43227069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 42313221 - 42313101
Alignment:
Q  161 agctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttt-tgcgtgtttgttca 259  Q
    |||||| ||| ||||| ||||||||||| |||  | || ||||||| ||| ||||||||||||| ||||  ||| |||| ||||| ||  | ||||||||    
T  42313221 agctttggttaaaaattgttgaagaactaaacatgattgtgagtttctgtgttatataatttctgatataagatgatgtatttttgtgtctatttgttca 42313122  T
Q  260 tgatgtttaactctctatttc 280  Q
    ||||||||| |||| ||||||    
T  42313121 tgatgtttagctctgtatttc 42313101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 41326997 - 41326877
Alignment:
Q  161 agctttagttcaaaatagttgaagaacttaacgggcttatgagtttttgttttatataatttctaatatgcgattatgtcttttt-tgcgtgtttgttca 259  Q
    |||||| ||| ||||| ||||||||||| |||  | || ||||||| ||| ||||||||||||  ||||| ||| |||| ||||| ||  | ||| ||||    
T  41326997 agctttggttaaaaattgttgaagaactaaacatggttgtgagtttctgtgttatataatttccgatatgagatgatgtatttttgtgtctatttcttca 41326898  T
Q  260 tgatgtttaactctctatttc 280  Q
    | |||||||||||| ||||||    
T  41326897 tcatgtttaactctgtatttc 41326877  T

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