View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18298_low_1 (Length: 880)
Name: NF18298_low_1
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18298_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 449 - 862
Target Start/End: Complemental strand, 28320431 - 28320018
Alignment:
| Q |
449 |
gaccactttagacactagctcatattgtttagcacatgtcactttcaattttgattactcacaaaaattagcaacttattcaatgaatatgcatttaaat |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320431 |
gaccactttagacactagctcatattgtttggcacatgtcactttcaattttgattactcacaaaaattagcaacttattcaatgaatatgcatttaaat |
28320332 |
T |
|
| Q |
549 |
caatgattgttttgactattttgatatccggttaattttggtttggaccaccctatgaatatgcatttaaatcaataagttttactactttcttattttt |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320331 |
caatgattgttttgactattttgatatccggttaattttggtttggaccactctatgaatatacatttaaatcaataagttttactactttcttattttt |
28320232 |
T |
|
| Q |
649 |
caatcattaatcctcagtttttctaatatcataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgaca |
748 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320231 |
caatcattaatcctcagtttttttaatatcataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgaca |
28320132 |
T |
|
| Q |
749 |
caacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaagg |
848 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320131 |
caacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaagg |
28320032 |
T |
|
| Q |
849 |
tgaaaccattgaag |
862 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28320031 |
tgaaaccattgaag |
28320018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 28320863 - 28320498
Alignment:
| Q |
18 |
tttacaaatgtccttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccatta |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320863 |
tttacaaatgtccttaattcaatttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccatta |
28320764 |
T |
|
| Q |
118 |
tttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320763 |
tttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaa |
28320664 |
T |
|
| Q |
218 |
tcatatgaagaagttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagat |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320663 |
tcatatgaagaagttgtgtgagatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagat |
28320564 |
T |
|
| Q |
318 |
tcacttcttaatattaatattggagaagcaaattcggaattgagccgcaatgagatggtgcatctg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
28320563 |
tcacttcttaatattaatattggagaagcaacttcggaattgagccgcagtgagatggtgcatctg |
28320498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 28331330 - 28330974
Alignment:
| Q |
30 |
cttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccattatttggggtatca |
129 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||||| ||||||||| || ||||| ||||||||||| ||||||| |||||| || || ||| |
|
|
| T |
28331330 |
cttaattcaatttcaaatactttgttctctattgatttggctcattccaca---cccgatgaaaagtctcaagagtttaagaaaattattgggagtttca |
28331234 |
T |
|
| Q |
130 |
tggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaatcatatgaagaa |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||| | | |||||||| |
|
|
| T |
28331233 |
tggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccagttacatgaagaa |
28331134 |
T |
|
| Q |
230 |
gttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttctt |
326 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
28331133 |
gttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgtgcaatgatgtgttagattcacttctt |
28331034 |
T |
|
| Q |
327 |
aatatta---atattggagaagcaaattcggaattgagccgcaatgagatggtgcatctg |
383 |
Q |
| |
|
|| | | || |||||||| | | || |||||||| |||||||||||||||||||||| |
|
|
| T |
28331033 |
aacaacaaccatgttggagaaaccactttggaattgacccgcaatgagatggtgcatctg |
28330974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 28304686 - 28304379
Alignment:
| Q |
18 |
tttacaaatgtccttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccatta |
117 |
Q |
| |
|
||||||| | || |||||||| |||||||||||||||||||||| |||||||| |||| ||| | |||||| ||||| |||| ||| | | ||||| |
|
|
| T |
28304686 |
tttacaactttctttaattcaatttcaaacactttgttctctattgatttggctcatttaaca---catgatga--agtctaaagagtttgaaaacatta |
28304592 |
T |
|
| Q |
118 |
tttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaa |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||| |
|
|
| T |
28304591 |
tttggggtatcatggaaaaagctggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccag |
28304492 |
T |
|
| Q |
218 |
tcatatgaagaagttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagat |
317 |
Q |
| |
|
| | ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
28304491 |
ttacatgaagaagttatgtgatattttttatggaattattgaagaaagaatttgttcaagagcttccaaagctgatgaggtttgcaatgatgggttagat |
28304392 |
T |
|
| Q |
318 |
tcacttcttaata |
330 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
28304391 |
tcacttctcaata |
28304379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 28310289 - 28309927
Alignment:
| Q |
18 |
tttacaaatgtccttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccatta |
117 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||||| |||||||||||||| ||||| ||| |||||||| ||||||||||||||||||| | ||| |
|
|
| T |
28310289 |
tttacaactatccttaattcaatttcaaacactttgtgttctatggatttggctcattcaaca---cctgatgaaaagtctcaagaatttaagaacgtta |
28310193 |
T |
|
| Q |
118 |
tttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaa |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| | | | |||||||| ||||| |
|
|
| T |
28310192 |
tgtggggtatcatggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaagaatacacgcaaggattaccaa |
28310093 |
T |
|
| Q |
218 |
tcatatgaagaagttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaa---agttgttgaggtttgcaatgatgtgtta |
314 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| | | | |||| ||||||||||||||| |
|
|
| T |
28310092 |
tcatatgaaaaagttgtgtgagatttttgatggaataattgaagaaagaattagttcaagagattccaattctgattctaaggtgtgcaatgatgtgtta |
28309993 |
T |
|
| Q |
315 |
gattcacttcttaatattaatattggagaagcaaattcggaattgagccgcaatgagatggtgcat |
380 |
Q |
| |
|
||||||||||||||| ||||||| |||| | | | |||||||||||||||| ||||||||| |
|
|
| T |
28309992 |
gattcacttcttaattacaatattgaagaaaccactaataaattgagccgcaatgaaatggtgcat |
28309927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 28296789 - 28296431
Alignment:
| Q |
30 |
cttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccattatttggggtatca |
129 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |||||| | |||||| | ||||||||||| ||| ||| |||||||||| || || |
|
|
| T |
28296789 |
cttaattcaatttcaaacactttgttctctattgatttggctgattccaaa---cctgataaaaagtctcaagagtttgagaacattatttggagttaca |
28296693 |
T |
|
| Q |
130 |
tggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaatcatatgaagaa |
229 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||| ||| || || |
|
|
| T |
28296692 |
tggaagcagctggtaggcctaatatttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaa |
28296593 |
T |
|
| Q |
230 |
gttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttctt |
326 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| | || ||||||| | |||||||||||| |||||||||||| |
|
|
| T |
28296592 |
gttgtgtgatatttttaatggaattattgaagaaagaatttgttcaagagcttccaatggtgattttgaggtgttcaatgatgtgttggattcacttctt |
28296493 |
T |
|
| Q |
327 |
aat------attaatattggagaagcaaattcggaattgagccgcaatgagatggtgcatct |
382 |
Q |
| |
|
||| | || |||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
28296492 |
aatagcaacaatattattggagaaagcacttatgaattgagccgcaatgagatggtgcatct |
28296431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 694 - 854
Target Start/End: Complemental strand, 28296354 - 28296193
Alignment:
| Q |
694 |
taattaaatttggaaatcatgttttg-ttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgt |
792 |
Q |
| |
|
||||| || |||||||| ||||||| |||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||| |
|
|
| T |
28296354 |
taattgaacttggaaatgatgtttttcttaggatttgtttgttgctggtattgacacaacatcaagcacgattgaatggattatggcggagctattacgt |
28296255 |
T |
|
| Q |
793 |
aatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaac |
854 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||| |
|
|
| T |
28296254 |
aaccctgacaaattaacaaaagtaagaaaggagttatgtcaagcaattggaaaagatgaaac |
28296193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 28288412 - 28288658
Alignment:
| Q |
18 |
tttacaaatgtccttaattcagtttcaaacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccatta |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||| || ||||||| ||| ||| |||| |
|
|
| T |
28288412 |
tttacaactgtccttaattcagtttcaaacactttcttctctatggatttggctcattcaac---acctgatgaaaaatctcaagtgtttgagaacattt |
28288508 |
T |
|
| Q |
118 |
tttggggtatcatggaagaagctggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaa |
217 |
Q |
| |
|
| | ||| | |||| |||| | | |||||||| | ||||||||||||||||||||||| ||||| |||||| | |||||||||| |||| ||| |
|
|
| T |
28288509 |
tgagaggtttatcggaactttctgggacgtctaatattgctgatttctttccaattcttcgtcctttagacccacaacgattgtatgcaaagatggccat |
28288608 |
T |
|
| Q |
218 |
tcatatgaagaagttgtgtgatatttttgatggaattattgaagaaagaa |
267 |
Q |
| |
|
|||| || || |||||||| ||| ||| ||||| ||||||||||||| |
|
|
| T |
28288609 |
tcatctggggagtttgtgtgagattattggaggaatcattgaagaaagaa |
28288658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 700 - 834
Target Start/End: Complemental strand, 28329026 - 28328892
Alignment:
| Q |
700 |
aatttggaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctg |
799 |
Q |
| |
|
||||||||||| || ||||| |||| |||||| |||||||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||| |||| |
|
|
| T |
28329026 |
aatttggaaattatattttggcaggatttattttttgctgggattgacacaacatcaaacacgattgaatggactatggcagagctattacgtaaccctg |
28328927 |
T |
|
| Q |
800 |
acaaattaacaaaagtaagaaaagagttatgtcaa |
834 |
Q |
| |
|
|||| || |||| ||||||||| ||||||||| |
|
|
| T |
28328926 |
gcaaactagataaagcaagaaaagaattatgtcaa |
28328892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 706 - 791
Target Start/End: Original strand, 28290625 - 28290710
Alignment:
| Q |
706 |
gaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacg |
791 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| || | |||||||||||| |
|
|
| T |
28290625 |
gaaatgatgttttgttaggatttatttgctgctgggattgacacaacttcaagcacaattgaatggatcatggtagagctactacg |
28290710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 713 - 862
Target Start/End: Complemental strand, 28303510 - 28303360
Alignment:
| Q |
713 |
tgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaatt-aacaa |
811 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| ||||||| | ||||| ||| |||| |||||||||||| |||| || ||| ||| || || |
|
|
| T |
28303510 |
tgttttgttatgatttatttgttgccgggattgacacatcatcaaggacgattgagtgggttatggcagagctactatgtaacccaaacacattaaaaaa |
28303411 |
T |
|
| Q |
812 |
aagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaag |
862 |
Q |
| |
|
|| |||||||||||||||| || ||||||| |||| |||||| ||||||| |
|
|
| T |
28303410 |
aaccaagaaaagagttatgtgaagcaattggtaaagatgaaacaattgaag |
28303360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 745 - 862
Target Start/End: Complemental strand, 28307300 - 28307183
Alignment:
| Q |
745 |
gacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggca |
844 |
Q |
| |
|
||||| |||||||||| ||||| ||| | || ||||||||| || |||||||||| |||||| |||||| |||||||||||||||| || |||||| | |
|
|
| T |
28307300 |
gacactacatcaagcaccattgagtgggtcatggcagagctattaggtaatcctgaaaaattagcaaaagcaagaaaagagttatgtaaagaaattggta |
28307201 |
T |
|
| Q |
845 |
aaggtgaaaccattgaag |
862 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
28307200 |
aagatgaaacaattgaag |
28307183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 28288683 - 28288716
Alignment:
| Q |
295 |
aggtttgcaatgatgtgttagattcacttcttaa |
328 |
Q |
| |
|
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| T |
28288683 |
aggtttgcaatgatgtgttagattcacttcttaa |
28288716 |
T |
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